Workflow Type: Galaxy
Frozen
The workflow begins with the Database Generation process. The Galaxy-P team has developed a workflow that collects protein sequences from known disease-causing microorganisms to build a comprehensive database. This extensive database is then refined into a smaller, more relevant dataset using the Metanovo tool.
Inputs
ID | Name | Description | Type |
---|---|---|---|
Contaminants cRAP Protein Database | #main/Contaminants cRAP Protein Database | Contaminants cRAP Protein Database |
|
Human SwissProt Protein Database | #main/Human SwissProt Protein Database | Human SwissProt Protein Database |
|
Species UniProt Protein Database | #main/Species UniProt Protein Database | Species UniProt Protein Database |
|
MS) datasets | #main/Tandem Mass Spectrometry (MS/MS) datasets | Tandem Mass Spectrometry (MS/MS) datasets |
|
Steps
ID | Name | Description |
---|---|---|
4 | Human UniProt Microbial Proteins cRAP for MetaNovo | Merging FASTA files toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.2.0 |
5 | Metanovo | Generating Customized Database toolshed.g2.bx.psu.edu/repos/galaxyp/metanovo/metanovo/1.9.4+galaxy4 |
6 | Merge all FASTA | Merge all FASTA toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.2.0 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
Human UniProt Microbial Proteins cRAP for MetaNovo | #main/Human UniProt Microbial Proteins cRAP for MetaNovo | n/a |
|
Human UniProt Microbial Proteins from MetaNovo cRAP | #main/Human UniProt Microbial Proteins from MetaNovo cRAP | n/a |
|
Metanovo Compact CSV database | #main/Metanovo Compact CSV database | n/a |
|
Metanovo Compact database | #main/Metanovo Compact database | n/a |
|
Version History
v0.1 (earliest) Created 23rd Nov 2024 at 03:02 by WorkflowHub Bot
Updated to v0.1
Frozen
v0.1
db96f9c
Creators and Submitter
Creators
Not specifiedAdditional credit
Subina Mehta
Submitter
Tool
Activity
Views: 150 Downloads: 37 Runs: 4
Created: 23rd Nov 2024 at 03:02
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Attributions
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