Refining Genome Annotations with Apollo (prokaryotes)
Version 1

Workflow Type: Galaxy

Refining Genome Annotations with Apollo

Inputs

ID Name Description Type
Amel_4.5_scaffolds.fa.gz #Amel_4.5_scaffolds.fa.gz n/a
  • File
amel_OGSv3.2.gff3.gz #amel_OGSv3.2.gff3.gz n/a
  • File
forager.bw #forager.bw n/a
  • File
forager_Amel4.5_accepted_hits.bam #forager_Amel4.5_accepted_hits.bam n/a
  • File

Steps

ID Name Description
4 Register Account toolshed.g2.bx.psu.edu/repos/gga/apollo_create_account/create_account/3.1
5 List Organisms toolshed.g2.bx.psu.edu/repos/gga/apollo_list_organism/list_organism/3.1
6 JBrowse toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy1
7 Create or Update Organism toolshed.g2.bx.psu.edu/repos/gga/apollo_create_or_update/create_or_update/4.2.5
8 Annotate toolshed.g2.bx.psu.edu/repos/gga/apollo_iframe/iframe/4.2.5

Outputs

ID Name Description Type
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

Version 1 (earliest) Created 14th Feb 2024 at 15:59 by Paul De Geest

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Open master 5767ac2
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Views: 670

Created: 14th Feb 2024 at 15:59

Last updated: 15th Feb 2024 at 13:44

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Total size: 17.7 KB
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