kmer-profiling-hifi-trio-VGP2/main
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Tests Create Meryl Database used for the estimation of assembly parameters and quality control with Merqury. Part of the VGP pipeline.
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| K-mer length | #main/K-mer length | n/a |
|
| Maternal reads | #main/Maternal reads | Collection of Illumina reads for the mother of the Individual sequenced with Pacbio Hifi. |
|
| Pacbio Hifi reads | #main/Pacbio Hifi reads | n/a |
|
| Paternal reads | #main/Paternal reads | Collection of Illumina reads for the father of the Individual sequenced with Pacbio Hifi. |
|
| Ploidy | #main/Ploidy | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 5 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
| 6 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
| 7 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
| 8 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
| 9 | GenomeScope | toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy2 |
| 10 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
| 11 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
| 12 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
| 13 | Genomescope on paternal haplotype | toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy2 |
| 14 | Genomescope on maternal haplotype | toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy2 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| GenomeScope Model Parameters (child) | #main/GenomeScope Model Parameters (child) | n/a |
|
| GenomeScope linear plot (child) | #main/GenomeScope linear plot (child) | n/a |
|
| GenomeScope linear plot (maternal) | #main/GenomeScope linear plot (maternal) | n/a |
|
| GenomeScope linear plot (paternal) | #main/GenomeScope linear plot (paternal) | n/a |
|
| GenomeScope log plot (child) | #main/GenomeScope log plot (child) | n/a |
|
| GenomeScope log plot (maternal) | #main/GenomeScope log plot (maternal) | n/a |
|
| GenomeScope log plot (paternal) | #main/GenomeScope log plot (paternal) | n/a |
|
| GenomeScope summary (child) | #main/GenomeScope summary (child) | n/a |
|
| GenomeScope transformed linear plot (child) | #main/GenomeScope transformed linear plot (child) | n/a |
|
| GenomeScope transformed linear plot (maternal) | #main/GenomeScope transformed linear plot (maternal) | n/a |
|
| GenomeScope transformed linear plot (paternal) | #main/GenomeScope transformed linear plot (paternal) | n/a |
|
| GenomeScope transformed log plot (child) | #main/GenomeScope transformed log plot (child) | n/a |
|
| GenomeScope transformed log plot (maternal) | #main/GenomeScope transformed log plot (maternal) | n/a |
|
| GenomeScope transformed log plot (paternal) | #main/GenomeScope transformed log plot (paternal) | n/a |
|
| Meryl database : Child | #main/Meryl database : Child | n/a |
|
| Meryl database : maternal | #main/Meryl database : maternal | n/a |
|
| Meryl database : paternal | #main/Meryl database : paternal | n/a |
|
Version History
v0.1.6 (latest) Created 10th May 2025 at 03:02 by WorkflowHub Bot
Updated to v0.1.6
Frozen
v0.1.6bf9dd38
v0.1.1 (earliest) Created 31st Oct 2023 at 03:01 by WorkflowHub Bot
Updated to v0.1.1
Frozen
v0.1.1
e6b9882
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Views: 10615 Downloads: 35672 Runs: 0
Created: 31st Oct 2023 at 03:01
Last updated: 10th May 2025 at 03:02
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