MGnify raw reads taxonomic profiling pipeline
main @ 5cd3f68

Workflow Type: Nextflow

The containerised pipeline for profiling shotgun metagenomic data is derived from the MGnify pipeline raw-reads analyses, a well-established resource used for analyzing microbiome data. Key components:

  • Quality control and decontamination
  • rRNA and ncRNA detection using Rfam database
  • Taxonomic classification of SSU and LSU regions
  • Abundance analysis with mOTUs

Version History

main @ 5cd3f68 (earliest) Created 30th Mar 2023 at 21:49 by Ekaterina Sakharova

add seqprep

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Views: 824   Downloads: 129

Created: 30th Mar 2023 at 21:49

Last updated: 4th Apr 2023 at 16:20

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Total size: 135 MB
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