GTN Training - Antibiotic Resistance Detection Version 1
Visit source
Download RO Crate
Run on usegalaxy.euWorkflow for the GTN training "Antibiotic resistance detection"
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Plasmids | Plasmids | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | NanoPlot | toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.25.0+galaxy1 |
| 10 | NanoPlot | toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.25.0+galaxy1 |
| 11 | Map with minimap2 | toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17 |
| 12 | Racon | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.3.1.1 |
| 2 | Map with minimap2 | toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17 |
| 3 | Create assemblies with Unicycler | toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.7.0 |
| 4 | miniasm | toolshed.g2.bx.psu.edu/repos/iuc/miniasm/miniasm/0.2+galaxy0 |
| 5 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0 |
| 6 | PlasFlow | toolshed.g2.bx.psu.edu/repos/iuc/plasflow/PlasFlow/1.0 |
| 7 | staramr | toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.5.1 |
| 8 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0 |
| 9 | GFA to FASTA | toolshed.g2.bx.psu.edu/repos/iuc/gfa_to_fa/gfa_to_fa/0.1.0 |
Version History
Version 1 (earliest) Created 24th Nov 2022 at 13:28 by Saskia Hiltemann
Initial commit
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Created: 24th Nov 2022 at 13:28
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Related items
Teams: NanoGalaxy
Organizations: Erasmus University Medical Centre
https://orcid.org/0000-0002-4594-8423
Teams: Galaxy Training Network
Organizations: Erasmus University Medical Centre
https://orcid.org/0000-0003-3803-468X
Post-doc at ErasmusMC, Galaxy Training Network (GTN) Lead
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run ...
Teams: Galaxy Training Network
Web page: https://galaxyproject.org/
The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
