Workflow Type: Galaxy
No description specified

Inputs

ID Name Description Type
pedigree pedigree n/a n/a
input input runtime parameter for tool Filter n/a
sec_header sec_header runtime parameter for tool bcftools merge n/a
intervals intervals runtime parameter for tool SnpEff eff: n/a
transcripts transcripts runtime parameter for tool SnpEff eff: n/a

Steps

ID Name Description
0 EGA Download Client toolshed.g2.bx.psu.edu/repos/iuc/ega_download_client/pyega3/4.0.0+galaxy0
1 EGA Download Client toolshed.g2.bx.psu.edu/repos/iuc/ega_download_client/pyega3/4.0.0+galaxy0
2 pedigree
3 Search in textfiles toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1
4 EGA Download Client toolshed.g2.bx.psu.edu/repos/iuc/ega_download_client/pyega3/4.0.0+galaxy0
5 Convert compressed file to uncompressed. CONVERTER_gz_to_uncompressed
6 Column Regex Find And Replace Add chr prefix toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.1
7 bcftools norm toolshed.g2.bx.psu.edu/repos/iuc/bcftools_norm/bcftools_norm/1.9+galaxy1
8 Filter Filter1
9 bcftools merge toolshed.g2.bx.psu.edu/repos/iuc/bcftools_merge/bcftools_merge/1.10
10 SnpEff eff: toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy1
11 GEMINI load toolshed.g2.bx.psu.edu/repos/iuc/gemini_load/gemini_load/0.20.1+galaxy2
12 GEMINI inheritance pattern toolshed.g2.bx.psu.edu/repos/iuc/gemini_inheritance/gemini_inheritance/0.20.1

Outputs

ID Name Description Type
authorized_datasets authorized_datasets n/a
dataset_file_list dataset_file_list n/a
output output n/a
downloaded_file_collection downloaded_file_collection n/a
output1 output1 n/a
out_file1 out_file1 n/a
output_file output_file n/a
out_file1 out_file1 n/a
output_file output_file n/a
snpeff_output snpeff_output n/a
statsFile statsFile n/a
outfile outfile n/a
outfile outfile n/a

Version History

Version 1 (earliest) Created 9th Jun 2022 at 09:32 by Helena Rasche

Initial commit


Open master c2cc6af
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Views: 119

Created: 9th Jun 2022 at 09:32

Last used: 28th Jun 2022 at 22:09

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Total size: 26.1 KB
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