Galaxy EISTA spatialdata + updated squidpy
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Run on Galaxy A comprehensive Galaxy workflow for the end-to-end analysis of spatial transcriptomics data, featuring automated QC, clustering, spatial statistics, cell type annotation, and cell-cell communication.
Version History
Version 5 (latest) Created 8th Jul 2026 at 08:17 by Amirhossein Naghsh Nilchi
This version includes an updated workflow in which the filtering and plotting based on the volume is optional, because some spatial data objects do not have that info.
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Version-5d41c97b
Version 4 Created 29th Jun 2026 at 15:55 by Amirhossein Naghsh Nilchi
Updated squidpy, spatialdata and liana versions
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Version-4
f4f5e66
Version 3 Created 19th May 2026 at 10:51 by Amirhossein Naghsh Nilchi
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Version-3
6e657d6
Version 2 Created 19th May 2026 at 10:37 by Amirhossein Naghsh Nilchi
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Version-2
deee199
Version 1 (earliest) Created 18th May 2026 at 13:50 by Amirhossein Naghsh Nilchi
First version of the WF
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Version-1
b414b09
Creators and Submitter
Views: 903 Downloads: 116 Runs: 34
Created: 18th May 2026 at 13:50
Last updated: 8th Jul 2026 at 08:28
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https://orcid.org/0000-0003-1329-3044
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
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This team and associated Galaxy workflows are maintained by the European Galaxy Team.
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