Workflows
What is a Workflow?Filters
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Created At
Updated At
Workflow type
Galaxy4
Tag
Retrosynthesis4
pathway prediction3
metabolic engineering2
pathway design2
Synthetic Biology2
genetic design1
Submitter
Melchior du Lac4
Team
IBISBA Workflows4
Space
Independent Teams4
Creator
Melchior du Lac4
Maturity
Stable4
4
Workflows visible to you, out of a total of 4
Stable
The workflow runs the RetroSynthesis algorithm to generate a collection of heterologous pathways in a host organism of choice, converts them to SBML files, performs analysis on the pathways to then rank the theoretical best performing ones.
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Stable
Generate possible metabolic routes for the production of a target molecule in an organism of choice
Stable
This workflow converts the top-ranking predicted pathways from the "RetroSynthesis" and "Pathway Analysis" workflows to plasmids intended to be expressed in the specified organism
Stable
Given a set of pathways generated by RetroPath2.0, this workflow informs the user as to the theoretically best performing ones based on four criteria: FBA, thermodynamic feasibility, length of the pathway, and reaction rule score.
