Teams

Team for general BY-COVID contributions

Common Infrastructure for National Cohorts in Europe, Canada, and Africa

Over the last forty years, we have seen the emergence of increasing numbers of large cohorts of human samples from research and national healthcare initiatives (e.g. UK Biobank, H3Africa). In Europe alone, the BBMRI-ERIC directory lists nearly 600 distinct biobanks with over 100 million samples of biomaterials and genetic data. In Canada there are sixteen biobanks and in Africa, three H3Africa Biorepositories are now ...

The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.

These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!

Kataegis refers to the occurrence of regional hypermutation and is a phenomenon observed in a wide range of malignancies. Using changepoint detection katdetectr aims to identify putative kataegis foci from common data-formats housing genomic variants. Katdetectr has shown to be a robust package for the detection, characterization and visualization of kataegis.