The workflows in this collection are from the '16S Microbial Analysis with mothur' tutorial for analysis of 16S data (Saskia Hiltemann, Bérénice Batut, Dave Clements), adapted for piepline use on galaxy australia (Ahmed Mehdi). The workflows developed in galaxy use mothur software package developed by Schloss et al https://pubmed.ncbi.nlm.nih.gov/19801464/.
Please also refer to the 16S tutorials available at Galaxy https://training.galaxyproject.org/training-material/topics/metagenomics/tutorials/mothur-miseq-sop-short/tutorial.html and https://training.galaxyproject.org/training-material/topics/metagenomics/tutorials/mothur-miseq-sop/tutorial.html Original workflows by Saskia Hiltemann, Bérénice Batut, Dave Clements are hosted there.
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Workflow 1: Further Quality Control [16S Microbial Analysis With Mothur]
- Added about 1 year ago -
Workflow 2: Data Cleaning And Chimera Removal [16S Microbial Analysis With Mothur]
- Added about 1 year ago -
Workflow 5: OTU Clustering [16S Microbial Analysis With Mothur]
- Added about 1 year ago -
Workflow 3: Classification [Galaxy Training: 16S Microbial Analysis With Mothur]
- Added about 1 year ago -
Workflow 6: Alpha Diversity [16S Microbial Analysis With Mothur]
- Added about 1 year ago -
Workflow 7 : Beta Diversity [16S Microbial Analysis With Mothur]
- Added about 1 year ago -
16S Microbial Analysis with mother - howto
- Added about 1 year ago
Creators
Additional credit
Original galaxy workflow developers: Saskia Hiltemann, Bérénice Batut, Dave Clements
Submitter
Views: 781
Created: 9th Nov 2023 at 04:58
Last updated: 9th Nov 2023 at 05:30
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