The workflows in this collection are from the '16S Microbial Analysis with mothur' tutorial for analysis of 16S data (Saskia Hiltemann, Bérénice Batut, Dave Clements), adapted for piepline use on galaxy australia (Ahmed Mehdi). The workflows developed in galaxy use mothur software package developed by Schloss et al https://pubmed.ncbi.nlm.nih.gov/19801464/.
Please also refer to the 16S tutorials available at Galaxy https://training.galaxyproject.org/training-material/topics/metagenomics/tutorials/mothur-miseq-sop-short/tutorial.html and https://training.galaxyproject.org/training-material/topics/metagenomics/tutorials/mothur-miseq-sop/tutorial.html Original workflows by Saskia Hiltemann, Bérénice Batut, Dave Clements are hosted there.
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Workflow 1: Further Quality Control [16S Microbial Analysis With Mothur]
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Workflow 2: Data Cleaning And Chimera Removal [16S Microbial Analysis With Mothur]
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Workflow 5: OTU Clustering [16S Microbial Analysis With Mothur]
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Workflow 3: Classification [Galaxy Training: 16S Microbial Analysis With Mothur]
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Workflow 6: Alpha Diversity [16S Microbial Analysis With Mothur]
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Workflow 7 : Beta Diversity [16S Microbial Analysis With Mothur]
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16S Microbial Analysis with mother - howto
- Added 23 days ago

Creators
Additional credit
Original galaxy workflow developers: Saskia Hiltemann, Bérénice Batut, Dave Clements
Submitter
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Created: 9th Nov 2023 at 04:58
Last updated: 9th Nov 2023 at 05:30

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