Workflow Type: Galaxy
Stable

Take a scRNAseq counts matrix from a single sample, and perform basic QC with scanpy. Then, do further processing by making a UMAP and clustering. Produces a processed AnnData object.

Steps

ID Name Description
8 scRNAseq: Load counts matrix n/a
9 scRNAseq_CellQC n/a
10 scRNAseq_QCtoBasicProcessing n/a

Version History

main @ 03682c0 (latest) Created 9th Nov 2023 at 01:56 by Sarah Williams

some differences in single sample workflows updated


Frozen main 03682c0

main @ a95a4ee (earliest) Created 22nd Jun 2023 at 07:50 by Sarah Williams

counts matrix workflow doc, affiliations


Frozen main a95a4ee
help Creators and Submitter
Creators
  • Sarah Williams
  • Mike Thang
  • Valentine Murigneaux
Submitter
Citation
Williams, S., Thang, M., & Murigneaux, V. (2023). {scRNAseq on galaxy workflows}.
License
Activity

Views: 1102

Created: 22nd Jun 2023 at 07:50

Last updated: 9th Nov 2023 at 01:56

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Total size: 3.6 MB
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