Genome-wide alternative splicing analysis v.2
Version 1

Workflow Type: Galaxy

Genome-wide alternative splicing analysis v.2.


ID Name Description Type
Active sites dataset n/a n/a
  • File
CPAT header n/a n/a
  • File
Genome annotation n/a n/a
  • File
Pfam-A HMM Stockholm file n/a n/a
  • File
Pfam-A HMM library n/a n/a
  • File
Protein coding transcripts n/a n/a
  • File
RNA-seq data collection n/a n/a
  • File
Reference genome n/a n/a
  • File
lncRNA transcripts n/a n/a
  • File


ID Name Description
10_fastp n/a n/a
11_Flatten collection n/a n/a
12_RNA STAR n/a n/a
13_FastQC n/a n/a
14_Concatenate datasets n/a n/a
15_MultiQC n/a n/a
16_Text reformatting n/a n/a
17_Cut n/a n/a
18_Sort n/a n/a
19_Unique n/a n/a
20_RNA STAR n/a n/a
21_Infer Experiment n/a n/a
22_Junction Saturation n/a n/a
23_Gene Body Coverage (BAM) n/a n/a
24_Read Distribution n/a n/a
25_Junction Annotation n/a n/a
26_StringTie n/a n/a
27_MultiQC n/a n/a
28_StringTie merge n/a n/a
29_StringTie n/a n/a
30_gffread n/a n/a
31_Extract element identifiers n/a n/a
32_Search in textfiles n/a n/a
33_Filter collection n/a n/a
34_IsoformSwitchAnalyzeR n/a n/a
35_IsoformSwitchAnalyzeR n/a n/a
36_CPAT n/a n/a
37_PfamScan n/a n/a
38_Remove beginning n/a n/a
39_Text reformatting n/a n/a
40_Concatenate datasets n/a n/a
41_IsoformSwitchAnalyzeR n/a n/a
42_IsoformSwitchAnalyzeR n/a n/a
9_Convert GTF to BED12 n/a n/a

Version History

Version 1 (earliest) Created 25th May 2023 at 23:01 by Cristóbal Gallardo

Initial commit

Open master f0f3903
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Created: 25th May 2023 at 23:01

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