qiime2-III-VI-downsteam/QIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis
v0.2 (latest)

v0.2 (latest)

v0.1 (earliest)

Workflow Type: Galaxy

This workflow

SEEK ID: https://workflowhub.eu/workflows/1090?version=2

Inputs

ID	Name	Description	Type
Feature table	#main/Feature table	Feature table. e.g. from DADA2	File
Maximum depth	#main/Maximum depth	Maximum depth used for the rarefaction analysis (minimum value : 1)	int
Metadata	#main/Metadata	Tab separated metadata file	File
Minimum depth	#main/Minimum depth	Minimum depth used for the rarefaction analysis (minimum value : 1)	int
Representative sequences	#main/Representative sequences	Representative sequences, e.g. from DADA2	File
SEPP fragment insertion reference	#main/SEPP fragment insertion reference	Reference data for the SEPP fragmentation insertion phylogenetic tree generation	File
Taxonomic classifier	#main/Taxonomic classifier	Taxonomic classifier (e.g. Greengenes or SILVA)	File

ID	Name	Description
7	Phylogenetic tree for diversity analysis	Phylogenetic tree for diversity analysis
8	Taxonomic analysis	Taxonomic analysis
9	Rarefaction	Rarefaction

ID	Name	Description	Type
Rarefaction curve	#main/Rarefaction curve	n/a	File
Rooted tree	#main/Rooted tree	n/a	File
Taxa barplot	#main/Taxa barplot	n/a	File
Taxonomy classification	#main/Taxonomy classification	n/a	File
Taxonomy classification table	#main/Taxonomy classification table	n/a	File

Updated to v0.2

Frozen v0.2 e37eb9d

Updated to v0.1

Frozen v0.1 76b5394

Creators and Submitter

Helmholtz-Zentrum für Umweltforschung - UFZ

License

Activity

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Created: 7th Aug 2024 at 03:02