4 items tagged with 'genome_assembly'.
Stable
Created: 9th Apr 2024 at 10:22
Views: 221, Downloads: 24
Stable
score-assemblies
A Snakemake-wrapper for evaluating de novo bacterial genome assemblies, e.g. from Oxford Nanopore (ONT) or Illumina sequencing.
The workflow includes the following programs:
...
Created: 6th Mar 2024 at 10:19, Last updated: 6th Mar 2024 at 10:27
Views: 188, Downloads: 59
Stable
ont-assembly-snake
A Snakemake wrapper for easily creating de novo bacterial genome assemblies from Oxford Nanopore (ONT) sequencing data, and optionally Illumina data, using any combination of read filtering, assembly, long and short read polishing, and reference-based polishing.
Included programs
read filtering | assembly | long read polishing | short read polishing | reference-based polishing |
---|---|---|---|---|
Filtlong | ||||
... |
Created: 6th Mar 2024 at 10:25
Views: 207, Downloads: 82
Stable
PacBio HiFi genome assembly using hifiasm v2.1
General usage recommendations
Please see the Genome assembly with hifiasm on Galaxy Australia guide.
See change log
Acknowledgements
The workflow & the doc_guidelines template used are supported by the Australian BioCommons via Bioplatforms Australia funding, the Australian ...
Created: 26th Oct 2021 at 01:25, Last updated: 24th Oct 2022 at 02:55
Views: 5431, Downloads: 308