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We gather the high throughput sequence data as it is generated, run quality control analysis to make sure the data is good quality and from the expected species. We assemble the long read sequence data into long contiguous pieces, then use further long-range sequencing data to scaffold the data into chromosome scale blocks. We then manually curate the assembly and submit it to INSDC.
We also develop automated tools and pipelines to enable the high throughput required for ever growing number of ...
Space: Sanger Tree of Life
Public web page: Not specified
TRON (Translationale Onkologie an der Universitätsmedizin der Johannes Gutenberg-Universität Mainz gemeinnützige GmbH) is an independent biopharmaceutical non-profit translational research organization pursuing new diagnostics and drugs for the treatment of cancer and other diseases with high medical need. We focus our transdisciplinary competencies in genomics and immunology to 1) develop novel platforms for the identification and validation of “omics”-based biomarkers and 2) for harnessing and ...
Space: Independent Teams
Public web page: https://github.com/TRON-Bioinformatics
An open infrastructure for exploring new horizons for research on microbial communities.
Team for URGI members, for testing/exploring mainly.
Space: Independent Teams
Public web page: https://www6.versailles-grignon.inrae.fr/urgi/
Space: Independent Teams
Public web page: https://usegalaxy.eu
Galaxy workflows developed by ELIXIR Belgium team.
Space: ELIXIR Belgium
Public web page: https://usegalaxy.be/workflows/list_published
A team to try the workflow hub and register workflows
Space: Independent Teams
Public web page: Not specified
Space: COVID-19 Biohackathon
Public web page: Not specified
The Vertebrate Genomes Pipelines in Galaxy are intended to allow a user to generate high-quality near error-free assemblies of species from a user's own data or from the GenomeArk database
Space: Biodiversity Genomics Europe (BGE)
Public web page: https://galaxyproject.org/projects/vgp/workflows/
Space: Independent Teams
Public web page: https://www.bits.vib.be