Workflows
What is a Workflow?Filters
call and score variants from WGS/WES of rare disease patients
Quantitative Mass Spectrometry nf-core workflow
Proteomics label-free quantification (LFQ) analysis pipeline using OpenMS and MSstats, with feature quantification, feature summarization, quality control and group-based statistical analysis.
Type: Nextflow
Creators: Julianus Pfeuffer, Lukas Heumos, Leon Bichmann, Timo Sachsenberg, Yasset Perez-Riverol
Submitter: WorkflowHub Bot
Protein 3D structure prediction pipeline
Type: Nextflow
Creators: Athanasios Baltzis, Jose Espinosa-Carrasco, Harshil Patel
Submitter: WorkflowHub Bot
Performs phylogenetic placement with EPA-NG
Pipeline for analysis of Molecular Pixelation assays
The pangenome graph construction pipeline renders a collection of sequences into a pangenome graph. Its goal is to build a graph that is locally directed and acyclic while preserving large-scale variation. Maintaining local linearity is important for interpretation, visualization, mapping, comparative genomics, and reuse of pangenome graphs
Proteogenomics database creation workflow using pypgatk framework.
De novo assembly pipeline for 10X linked-reads, used at the SciLifeLab National Genomics Infrastructure.
A comprehensive cancer NGS analysis and reporting pipeline
