Version 1

Workflow Type: Nextflow

metaboigniter is bioinformatics pipeline for pre-processing of mass spectrometry-based metabolomics data. It can be used to perform quantification and identification based on MS1 and MS2 data. The backbone of pipeline is based on XCMS, OpenMS, CAMERA, MSnbase, MetFrag, CSIFingerID, CFM-ID, and several other customized tools to noise filtering, quantification and identification both for library and in-silico identification. Please go on to this page to learn how to use the workflow

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker containers making installation trivial and results highly reproducible.

Total size: 142 KB
help Creators and Submitter
  • Payam Emami
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Views: 600   Downloads: 34

Created: 30th Sep 2020 at 15:51

Last used: 22nd Jan 2022 at 16:07

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Version History

Version 1 (earliest) Created 30th Sep 2020 at 15:51 by Phil Ewels

Added/updated 1 files

Open master 646b3a8

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