Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Tool
RepeatMasker2
BUSCO8
Merqury6
Bwa-mem25
gfastats5
Minimap24
fastp3
GenomeScope 2.03
purge_dups3
BEDTools2
BRAKER12
Diamond2
HiCExplorer2
NCBI Datasets2
Picard2
RepeatModeler2
RSeQC2
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SRA Software Toolkit2
AGAT1
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BLAST1
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funannotate1
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HISAT21
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OMArk1
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protexcluder1
QUAST1
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STAR1
StringTie1
TaxonKit1
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Tag
Annotation2
Genomics2
Transcriptomics2
BGE1
Bioinformatics1
DE_NOVO1
ERGA1
Nextflow1
rna-seq1
Workflows1
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Submitter
Tom Brown2
Team
ERGA Annotation2
Maturity
Stable1
Stable
ANNOTATO - Annotation workflow To Annotate Them Oll
ERGA Protein-coding gene annotation workflow.
Adapted from the work of Sagane Joye:
https://github.com/sdind/genome_annotation_workflow
Prerequisites
The following programs are required to run the workflow and the listed version were tested. It should be noted that older versions of snakemake are not compatible with newer versions of singularity as is noted here: https://github.com/nextflow-io/nextflow/issues/1659.
conda v 23.7.3
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