Teams

Here we introduce a scientific workflow implementing several open-source software executed by Parsl parallel scripting language in an high-performance computing environment. We have applied the workflow to a single-cardiomyocyte RNA-seq data retrieved from Gene Expression Omnibus database. The workflow allows for the analysis (alignment, QC, sort and count reads, statistics generation) of raw RNA-seq data and seamless integration of differential expression results into a configurable script code. ...

Personalized Medicine Center of Excellence

An open-source bioinformatics community, based in Japan. Members include academic and private companies. Working with the topics such as workflow sharing and cloud computing infrastructure.

The Plant Genomes Pipelines in Galaxy are intended to allow a user to generate high-quality near error-free assemblies of species from a user's own data or from any online genome database

French Biodiversity e-infrastructure

A series of tools and an open database of polygenic scores and the relevant metadata required for accurate application and evaluation.