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Independent Teams227 COVID-19 Biohackathon22 Australian BioCommons19 A Digital Twin for GEOphysical extremes (DT-GEO)14 eFlows4HPC10 EOSC-Life7 BioExcel6 HoloFood6 ERGA6 DISSCo - Distributed System of Scientific Collections5 Biodiversity Genomics Europe (BGE)5 nf-core3 BeYond-COVID (BY-COVID)3 ELIXIR Belgium3 HELIPORT3 Sanger Tree of Life3 ELIXIR2 EOSC-Life-WP61 Harvard FASRC1 RECETOX1 JKU 1 NTVy's WorkflowHub1 BioDT1 IRRI-Bioinformatics1 Coupled Catchment Lake Modelling1 More...

IBISBA Workflows21 GalaxyProject SARS-CoV-216 MGnify11 Australian BioCommons11 EuroScienceGateway11 EJPRD WP13 case-studies workflows10 Euro-BioImaging10 Galaxy Training Network9 WP5 - Volcanoes7 WP7 - Earthquakes7 eFlows4HPC general7 BioBB Building Blocks6 usegalaxy-eu6 UX trial team6 HoloFood at MGnify6 Workflows and Distributed Computing6 Scipion CNB6 CWL workflow SARS-CoV-25 SeBiMER5 OME5 OpenEBench5 Specimen Data Refinery5 Defragmentation TS5 ELIXIR Proteomics5 NGFF Tools5 ERGA Assembly5 Pillar II: Climate5 nf-core viralrecon4 SARS-CoV-2 Data Hubs4 EOSC-Life WP34 QCIF Bioinformatics4 Sydney Informatics Hub4 Common Workflow Language (CWL) community4 Galaxy Australia4 CO2MICS Lab4 Vertebrate Genomes Pipelines in Galaxy4 WP8 - Anthropogenic geophysical extremes4 Pillar III: Urgent computing for natural hazards4 ERGA Annotation4 nf-core3 Integrated and Urban Plant Pathology Laboratory3 EOSC-Life - Demonstrator 7: Rare Diseases3 iPC: individualizedPaediatricCure3 Snakemake-Workflows3 TransBioNet3 usegalaxy.be workflows3 Air Quality Prediction3 TRE-FX3 Metabolomics-Reproducibility3 Helmholtz Scientific Project Workflow Platform3 BY-COVID Baseline Use Case: SARS-CoV-2 Vaccine(s) effectiveness in preventing SARS-CoV-2 infection3 Pillar I: Manufacturing3 Tree of Life Genome Assembly3 Tree of Life Genome Analysis3 V-Pipe2 ELIXIR Cloud & AAI2 UNLOCK2 Galaxy Climate2 PNDB2 iwc2 Genomics Coordination Center2 Pawsey Supercomputing Research Centre2 Janis2 MAB - ATGC2 ODA2 Applied Computational Biology at IEG/HMGU2 INFRAFRONTIER workflows2 FAIR Computational Workflows2 CINECA2 Pitagora-Network2 Medizinisches Proteom-Center, Medical Bioinformatics2 AGRF BIO2 EU-Openscreen2 X-omics2 Cluster Emergent del Cervell Humà2 CAPSID2 NBIS2 GEMS at MLZ2 Computational Science at HZDR2 BSC-CES2 CSFG2 WP6 - Tsunamis2 Polygenic Score Catalog2 Biodiversity Genomics Europe (general)2 EBP-Nor2 Ewastools1 Test team1 NMR Workflow1 NanoGalaxy1 IMBforge1 COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource1 LBI-RUD1 Nick-test-team1 Italy-Covid-data-Portal1 lmjxteam21 virAnnot pipeline1 Ay Lab1 EOSC-Life-WP6-Demos1 Harkany Lab1 BioExcel Best Practice Guides1 Testing1 IAA-CSIC1 Melbourne Data Analytics Platform (MDAP)1 Probabilistic graphical models1 GenX1 IPK BIT1 Harvard University FAS Research Computing1 FAME1 CHU Limoges - UF9481 Bioinformatique / CNR Herpesvirus1 Quadram Institute Bioscience - Bioinformatics1 HecatombDevelopment1 Institute of Human Genetics1 Testing RO Crates1 Test Team1 RECETOX1 ELIXIR Training1 Bioinformatics and Biostatistics (BIO2 ) Core1 VIB Bioinformatics Core1 CRC Cohort1 ICAN1 MustafaVoh1 Single Cell Unit1 CO-Graph1 emo-bon1 TestEMBL-EBIOntology1 Toxicology community1 Workflows Australia1 Gyn Department1 ELIXIR Belgium1 URGI1 Size Inc1 GA-VirReport Team1 The Boucher Lab1 pyiron1 Edinburgh Genomics1 Phytoplankton Analysis1 Seq4AMR1 KTest1 Workflow registry test1 Read2Map1 SKM31 ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression1 de.NBI Cloud1 Meta-NanoSim1 ILVO Plant Health1 EMERGEN-BIOINFO1 KircherLab1 Apis-wings1 BCCM_ULC1 Dessimoz Lab1 TRON gGmbH1 Big data in biomedicine1 BioDT Use Case 4.1.1.2 Ecosystem services1 MISTIC1 Guigó lab1 Statistical genetics1 Delineating Regions-of-interest for Mass Spectrometry Imaging by Multimodally Corroborated Spatial Segmentation1 WES1 Bioinformatics Unit @ CRG1 Bioinformatics Innovation Lab1 Black Ochre Data Labs1 IRRI Bioinformatics Group1 Zavolan Lab1 Team Cardio1 Bioinformatics workflows for life science1 Workflows for geographic science1 Pacific-deep-sea-sponges-microbiome1 SNAKE1 Katdetectr1 INFRAFRONTIER GmbH1 PerMedCoE1 Lake Erken modelling setup1 EOSC-Life WP3 OC Team, cross RI project1 ANSES-Ploufragan1 SANBI Pathogen Bioinformatics1 Biodata Analysis Group1 DeSci Labs1 Erasmus MC - Viroscience Bioinformatics1 ARA-dev1 Mendel Centre for Plant Genomics and Proteomics1 Metagenomic tools1 WorkflowEng1 bpm1 scNTImpute1 Systems Biotechnology laboratory1 Cimorgh IT solutions1 MLme: Machine Learning Made Easy1 Hurwitz Lab1 Dioscuri TDA1 System Biotechnology laboratory1 yPublish - Bioinfo tools1 NIH CFDE Playbook Workflow Partnership1 MMV-Lab1 EMBL-CBA1 Evaluation of Swin Transformer and knowledge transfer for denoising of super-resolution structured illumination microscopy data1 Bioinformatics Laboratory for Genomics and Biodiversity (LBGB)1 multi-analysis dFC1 More...

EMBL-EBI17 Barcelona Supercomputing Center (BSC-CNS)16 The University of Manchester12 Unspecified12 Australian BioCommons11 Euro-BioImaging10 Spanish National Research Council (CSIC)9 EJP-RD8 ELIXIR Belgium6 INRAe6 Erasmus University Medical Centre6 European Galaxy Team6 IFREMER5 The University of Sydney5 Istituto Nazionale di Geofisica e Vulcanologia (INGV)5 IRISA4 University of Melbourne4 QCIF4 Centre National de la Recherche Scientifique (CNRS)4 Albert-Ludwigs-Universität Freiburg3 SIB - Swiss Institute of Bioinformatics3 University of Bradford3 French Museum of Natural History3 Liege university3 Galaxy3 Helmholtz-Zentrum Dresden - Rossendorf3 Wellcome Sanger Institute3 JNU - School of Computational and Integrative Sciences (SC&IS)2 UNLOCK2 Institute for Research in Biomedicine (IRB)2 Pawsey Supercomputing Centre2 University Medical Center Groningen2 Maastricht University2 University of Basel2 MMODA2 Biomedical Research Foundation (BRFAA) of the Academy of Athens2 Helmholtz Zentrum München2 INFRAFRONTIER GmbH2 University of Dundee2 VIB2 Medical Proteome Center2 Fraunhofer Institute for Translational Medicine and Pharmacology ITMP2 X-omics2 CNRS - Centre Est2 NBIS – National Bioinformatics Infrastructure Sweden2 ELIXIR2 University of Lausanne2 Helmholtz Zentrum Hereon2 Sciensano2 IZW2 Open Microscopy Enronment (OME)2 ETH Zürich2 Geosciences Barcelona (GEO3BCN-CSIC)2 Mondaic AG2 University of Nottingham2 Fondazione Centro Euro-Mediterraneo sui Cambiamenti Climatici (CMCC)2 BC Centre for Disease Control1 Institut Pasteur1 Earlham Institute1 CRS41 CIRMMP1 SciLifeLab1 gx-climate1 IISER, Mohali1 Institute of Molecular Biology1 VU Amsterdam1 LBI-RUD1 ELIXIR-IT1 lmjxteam21 Bots1 La Jolla Institute of Immunology1 ff1 Medical University of Vienna1 Peter MacCallum Cancer Centre1 Leiden University Medical Center1 GenX1 University of Duisburg-Essen1 IPK Gatersleben1 Harvard University1 e-NIOS1 FAME1 CHU Limoges1 Quadram Institute Bioscience1 Washington University in St. Louis1 University of Queensland1 FCBG1 RECETOX1 ELIXIR-UK1 The Natural History Museum London1 Wellcome-MRC Institute of Metabolic Science1 Institut du thorax1 Shri Vinoba Bhave Civil Hospital1 National University of Ireland, Galway1 BSRC Alexander Fleming1 CO-Graph1 IMBBC-HCMR1 University of Tartu1 Database Center for Life Science1 The University of Melbourne1 Johannes Kepler University1 AGRF1 university of manchester1 Size1 Queensland university of Technology1 University of Florida1 EMBL1 Max-Planck-Institut für Eisenforschung1 University of Edinburgh1 Penn State University1 Medical Research Council Brain Network Dynamics Unit at the University of Oxford Nuffield Department of Clinical Neurosciences1 Defragmentation TS1 Hubrecht Institute1 Italian National Research Council1 University of Science, HCMVNU1 University of Illinois at Urbana-Champaign1 Texas A&M University1 The Open University1 National Laboratory of Scientific Computing1 de.NBI Cloud1 BC Cancer Genome Sciences Centre1 Institute for Agricultural, Fisheries and Food Research (ILVO)1 CNRS1 Berlin Institute of Health at Charité - Universitätsmedizin Berlin1 University of Agriculture in Krakow1 BCCMULC1 TRON1 Helmholtz-Zentrum Dresden-Rossendorf1 TUM - Technical University of Munich1 UK Centre for Ecology & Hydrology1 metagenome-workflows1 Inria1 Centre for Genomic Regulation (CRG)1 Universitat de Barcelona (UB)1 Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences1 Oak Ridge National Laboratory1 Centre for Genomic Regulation1 Pondicherry University1 Telethon Kids Institute1 International Rice Research Institute1 University of Southern Denmark1 Friedrich Schiller University1 Centenary Institute1 Merck KGaA1 CNIC1 Concordia University CSFG1 Leibniz Institute for Zoo and Wildlife Research1 German Cancer Research Center (DKFZ)1 University of Córdoba1 Biocampus1 German BioImaging1 Leibniz Institute of Plant Biochemistry1 CCMAR1 Uppsala University1 EOSC-Life1 French Agency for Food, Environmental and Occupational Health & Safety (Ploufragan-Plouzané-Niort Laboratory)1 SANBI, University of the Western Cape1 Institute of Applied Biosciences, Centre of Research and Technology, Hellas (INAB|CERTH)1 Mount Sinai1 Kyoto University1 DeSci Labs1 Adam Mickiewicz University1 Masaryk University1 ACC Cyfronet AGH1 University of Cambridge1 The North China University of Technology1 Yunnan Normal University1 cimorgh IT1 CNAG1 University of Bern1 The University of Arizona1 Genoscope1 Mathematical Institute Polish Academy of Sciences1 yPublish1 Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V.1 European Molecular Biology Laboratory1 University of Bergen1 Bielefeld university of applied sciences and arts1 University of Oslo1 McGill University1 Naturalis1 EPFL1 More...

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Bioinformatics30 Scientific workflow developement10 Metagenomics10 Software Engineering9 Genomics8 Data Management7 Machine Learning7 Computer Science7 Systems Biology6 Microbiology5 NGS5 Cheminformatics4 Bioengineering4 AI3 image analysis3 Biochemistry2 Molecular Biology2 Mathematical Modelling2 Python2 Workflows2 Computer Aided Design2 Biostatistics2 Metabarcoding2 amplicon analysis2 phylogenomics2 high-performance computing2 evolution2 Genetics1 Proteomics1 Metabolomics1 R1 Synthetic Biology1 Retrosynthesis1 Neuroscience1 algorithm1 Mass Spectrometry Imaging1 bash1 Ecophysiology1 Molecular Modelling1 Biomolecular Dynamics Simulations1 Database Development1 Protein Structural Alignment1 phylogenetics1 Plant Sciences1 WDL1 Lipidomics1 astronomy1 workflow managers1 open source1 fuzzy logic1 graphs1 Limnology1 numerical methods1 Geophysics1 Probabilistic Inversion1 Theoretical Seismology1 Programming Models1 High Performance Computing1 Distributed Computing1 Provenance1 More...

Python20 Workflows15 R13 Nextflow9 Transcriptomics8 Databases7 Jupyter notebook7 Machine Learning6 Galaxy6 Web services5 CWL5 Snakemake5 nf-core4 Mathematical Modelling3 Genomics3 Perl3 Java2 PCR2 C/C++2 Web2 Microbiology1 Molecular Biology1 Computational and theoretical biology1 Genetic analysis1 Proteomics1 Virology1 Single Cell analysis1 SBML1 Matlab1 rtPCR1 Mass spectrometry1 Cytoscape1 Conda1 Roddy1 COMPSs1 Napari1 MIAPPE1 WDL1 Autosubmit1 Cylc1 ecFlow1 C1 C++1 More...