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MultiQC16
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fastp8
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covid-198
Metagenomics8
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covid19.galaxyproject.org6
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workflow4metabolomics2
#single-cell1
16S1
18S1
airr1
alevin1
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alphafold21
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amplicon-sequencing1
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kraken21
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minimal-example1
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molecularcartography1
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ms11
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MultiQC1
name:amplicon1
name:single-cell1
nanostring1
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nascent1
natural-products1
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nucleosome-maps1
nucleosome-positioning1
optitype1
oxford-nanopore1
pacbio1
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pathogen1
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peptides1
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phylogenetic-placement1
phylogenetics1
phylogeny1
pixelator1
pixelgen-technologies1
population-genetics1
pox1
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pro-seq1
Profiling1
prokaryotes1
protein-databases1
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protein-folding1
protein-sequences1
protein-structure1
proteins1
pypgatk1
QC1
qiime21
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repseq1
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rrna1
SAMTools1
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screening1
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shiny1
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slamseq1
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spatial-transcriptomics1
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st1
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Supernova1
synapse1
tama1
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tidyverse1
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variant-annotation1
viral1
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Virology1
viruses1
virusintegrationfinder1
visium1
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WGS1
whole-exome-sequencing1
whole-genome-sequencing1
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Submitter
WorkflowHub Bot131
Space
nf-core69
Creator
Wolfgang Maier1
131
Workflows visible to you, out of a total of 131
Contiging Solo w/HiC:
Generate phased assembly based on PacBio Hifi Reads using HiC data from the same individual for phasing.
Inputs
- Hifi long reads [fastq]
- HiC forward reads (if multiple input files, concatenated in same order as reverse reads) [fastq]
- HiC reverse reads (if multiple input files, concatenated in same order as forward reads) [fastq]
- K-mer database [meryldb]
- Genome profile summary generated by Genomescope [txt]
- Name of first assembly
- Name of second ...
Assembly with Hifi reads and Trio Data
Generate phased assembly based on PacBio Hifi Reads using parental Illumina data for phasing
Inputs
- Hifi long reads [fastq]
- Concatenated Illumina reads : Paternal [fastq]
- Concatenated Illumina reads : Maternal [fastq]
- K-mer database [meryldb]
- Paternal hapmer database [meryldb]
- Maternal hapmer database [meryldb]
- Genome profile summary generated by Genomescope [txt]
- Genome model parameters generated by Genomescope [tabular]
...
No description specified
Microbiome - Variant calling and Consensus Building
Nanopore datasets analysis - Phylogenetic Identification - antibiotic resistance genes detection and contigs building
Microbiome - QC and Contamination Filtering
Pathogens of all samples report generation and visualization
Microbiome - Taxonomy Profiling
Generate Nx and Size plot for multiple assemblies
Inputs
Collection of fasta files. The name of each item in the collection will be used as label for the Nx and Size plots.
Outputs
- Nx plot
- Size plot