Workflows
What is a Workflow?Filters
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Created At
Updated At
Workflow type
Common Workflow Language1
Submitter
Bart Nijsse1
Team
UNLOCK1
Space
Independent Teams1
Topic annotations
Sequence contamination filtering1
Operation annotations
Sequence contamination filtering1
Sequencing quality control1
Taxonomic classification1
Maturity
Stable1
1
Workflow matching the given criteria:
(Clear all filters)
Operation annotations:
Sequence contamination filtering1
Stable
Workflow for Illumina Quality Control and Filtering
Multiple paired datasets will be merged into single paired dataset.
Summary:
- FastQC on raw data files
- fastp for read quality trimming
- BBduk for phiX and (optional) rRNA filtering
- Kraken2 for taxonomic classification of reads (optional)
- BBmap for (contamination) filtering using given references (optional)
- FastQC on filtered (merged) data
Other UNLOCK workflows on WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default ...