WorkflowsWhat is a Workflow?
Workflow typeCommon Workflow Language1
CreatorJasper Koehorst1 Bart Nijsse1
Topic annotationsData quality management1
Operation annotationsSequence contamination filtering1 Sequencing quality control1 Taxonomic classification1
1 Workflow visible to you, out of a total of 1
Workflow for Illumina Quality Control and Filtering
Multiple paired datasets will be merged into single paired dataset.
- FastQC on raw data files
- fastp for read quality trimming
- BBduk for phiX and (optional) rRNA filtering
- Kraken2 for taxonomic classification of reads (optional)
- BBmap for (contamination) filtering using given references (optional)
- FastQC on filtered (merged) data
Other UNLOCK workflows on WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default ...
Type: Common Workflow Language
Creators: Bart Nijsse, Jasper Koehorst
Submitter: Bart Nijsse