Genomics - Read pre-processing
Version 1

Workflow Type: Galaxy

Preprocessing of raw SARS-CoV-2 reads. More info can be found at

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ID Name Description Type
0_Input Dataset n/a n/a
  • File
1_Input Dataset n/a n/a
  • File


ID Name Description
10_MultiQC n/a n/a
11_Filter SAM or BAM, output SAM or BAM n/a n/a
12_Filter SAM or BAM, output SAM or BAM n/a n/a
13_MergeSamFiles n/a n/a
14_MergeSamFiles n/a n/a
15_Samtools fastx n/a n/a
16_Samtools fastx n/a n/a
2_Faster Download and Extract Reads in FASTQ n/a n/a
3_Faster Download and Extract Reads in FASTQ n/a n/a
4_fastp n/a n/a
5_NanoPlot n/a n/a
6_FastQC n/a n/a
7_Map with minimap2 n/a n/a
8_MultiQC n/a n/a
9_Map with BWA-MEM n/a n/a

Version History

Version 1 (earliest) Created 10th Apr 2020 at 11:20 by Bert Droesbeke

Added/updated 3 files

Open master 571baa6
help Creators and Submitter
Not specified
Additional credit

Dannon Baker, Marius van den Beek, Dave Bouvier, John Chilton, Nate Coraor, Frederik Coppens, Bert Droesbeke, Ignacio Eguinoa, Simon Gladman, Björn Grüning, Delphine Larivière, Gildas Le Corguillé, Andrew Lonie, Nicholas Keener, Sergei Kosakovsky Pond, Wolfgang Maier, Anton Nekrutenko, James Taylor, Steven Weaver


Views: 3184   Downloads: 325

Created: 10th Apr 2020 at 11:20

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