Genomics - Read pre-processing
Version 1

Preprocessing of raw SARS-CoV-2 reads. More info can be found at https://covid19.galaxyproject.org/genomics/

Inputs

ID Name Description Type
#main/0_Input Dataset n/a n/a File
#main/1_Input Dataset n/a n/a File

Steps

ID Name Description
#main/10_MultiQC
#main/11_Filter SAM or BAM, output SAM or BAM
#main/12_Filter SAM or BAM, output SAM or BAM
#main/13_MergeSamFiles
#main/14_MergeSamFiles
#main/15_Samtools fastx
#main/16_Samtools fastx
#main/2_Faster Download and Extract Reads in FASTQ
#main/3_Faster Download and Extract Reads in FASTQ
#main/4_fastp
#main/5_NanoPlot
#main/6_FastQC
#main/7_Map with minimap2
#main/8_MultiQC
#main/9_Map with BWA-MEM
help Creators and Submitter
Creators
  • Dannon Baker
  • Marius van den Beek
  • Dave Bouvier
  • John Chilton
  • Nate Coraor
  • Frederik Coppens
  • Bert Droesbeke
  • Ignacio Eguinoa
  • Simon Gladman
  • Björn Grüning
  • Delphine Larivière
  • Gildas Le Corguillé
  • Andrew Lonie
  • Nicholas Keener
  • Sergei Kosakovsky Pond
  • Wolfgang Maier
  • Anton Nekrutenko
  • James Taylor
  • Steven Weaver
Submitter
License
Activity

Views: 436   Downloads: 9

Created: 10th Apr 2020 at 11:20

Last used: 13th Aug 2020 at 00:33

help Tags
help Attributions

None

Related items

Powered by
(v.1.11.master)
Copyright © 2008 - 2020 The University of Manchester and HITS gGmbH