Workflow Type: Galaxy
Frozen
Frozen
Downloads fastq files for sequencing run accessions provided in a text file using fasterq-dump. Creates one job per listed run accession.
Inputs
ID | Name | Description | Type |
---|---|---|---|
Run accessions | #main/Run accessions | Text file containing run accessions (starting with SRR, ERR or DRR), one per line. |
|
Steps
ID | Name | Description |
---|---|---|
1 | Split accessions to collection | toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.2 |
2 | fasterq-dump | toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.1.1+galaxy0 |
3 | flatten paired output | __APPLY_RULES__ |
4 | flatten single end output | __APPLY_RULES__ |
Outputs
ID | Name | Description | Type |
---|---|---|---|
Paired End Reads | #main/Paired End Reads | n/a |
|
Single End Reads | #main/Single End Reads | n/a |
|
Version History
v0.1.14 (latest) Created 11th Jun 2024 at 03:01 by WorkflowHub Bot
Updated to v0.1.14
Frozen
v0.1.14
448a45c
v0.1 (earliest) Created 23rd Jul 2021 at 10:18 by WorkflowHub Bot
Added/updated 12 files
Frozen
master
ff682ec
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
Creator
Additional credit
IWC
Submitter
Tool
License
Activity
Views: 7020 Downloads: 924 Runs: 0
Created: 23rd Jul 2021 at 10:18
Last updated: 6th Sep 2023 at 03:01
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
This item has not yet been tagged.
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
None