nf-core/sarek
2.5.1

3.9.0 (latest)

3.8.1

3.8.0

3.7.1

3.7.0

3.6.1

3.6.0

3.5.1

3.5.0

3.4.4

3.4.3

3.4.2

3.4.1

3.4.0

3.3.2

3.3.1

3.3.0

3.2.3

3.2.2

3.2.1

3.2.0

3.1.2

3.1.1

3.1

3.0.2

3.0.1

3.0

2.7.2

2.7.1

2.7

2.6.1

2.6

2.5.2

2.5.1

2.5 (earliest)

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Workflow Type: Nextflow

An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing

SEEK ID: https://workflowhub.eu/workflows/1020?version=2

Version History

3.9.0 (latest) Created 2nd Jul 2026 at 03:07 by WorkflowHub Bot

Updated to 3.9.0

Frozen 3.9.0 b97952e

3.8.1 Created 28th Jun 2026 at 03:09 by WorkflowHub Bot

Updated to 3.8.1

Frozen 3.8.1 4bd2948

3.8.0 Created 28th Jun 2026 at 03:09 by WorkflowHub Bot

Updated to 3.8.0

Frozen 3.8.0 e9f1750

3.7.1 Created 28th Jun 2026 at 03:09 by WorkflowHub Bot

Updated to 3.7.1

Frozen 3.7.1 20f41d1

3.7.0 Created 28th Jun 2026 at 03:09 by WorkflowHub Bot

Updated to 3.7.0

Frozen 3.7.0 185ab6e

3.6.1 Created 28th Jun 2026 at 03:09 by WorkflowHub Bot

Updated to 3.6.1

Frozen 3.6.1 9b85c0f

3.6.0 Created 28th Jun 2026 at 03:09 by WorkflowHub Bot

Updated to 3.6.0

Frozen 3.6.0 08887a8

3.5.1 Created 19th Feb 2025 at 04:04 by WorkflowHub Bot

Updated to 3.5.1

Frozen 3.5.1 5fe5cdf

3.5.0 Created 13th Dec 2024 at 04:05 by WorkflowHub Bot

Updated to 3.5.0

Frozen 3.5.0 ae4dd11

3.4.4 Created 4th Sep 2024 at 04:03 by WorkflowHub Bot

Updated to 3.4.4

Frozen 3.4.4 5cc3049

3.4.3 Created 8th Aug 2024 at 04:03 by WorkflowHub Bot

Updated to 3.4.3

Frozen 3.4.3 e92242e

3.4.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.4.2

Frozen 3.4.2 b5b766d

3.4.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.4.1

Frozen 3.4.1 ea88402

3.4.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.4.0

Frozen 3.4.0 6aeac92

3.3.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.3.2

Frozen 3.3.2 f034b73

3.3.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.3.1

Frozen 3.3.1 59026dc

3.3.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.3.0

Frozen 3.3.0 1a263a2

3.2.3 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.2.3

Frozen 3.2.3 ed1cc84

3.2.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.2.2

Frozen 3.2.2 6ec8c1c

3.2.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.2.1

Frozen 3.2.1 6c0d335

3.2.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.2.0

Frozen 3.2.0 71fac18

3.1.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.1.2

Frozen 3.1.2 c87f4eb

3.1.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.1.1

Frozen 3.1.1 96749f7

3.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.1

Frozen 3.1 0b7f0e2

3.0.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.0.2

Frozen 3.0.2 bcd7bf9

3.0.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.0.1

Frozen 3.0.1 ad2b34f

3.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.0

Frozen 3.0 5bb160d

2.7.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 2.7.2

Frozen 2.7.2 e8f56e5

2.7.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 2.7.1

Frozen 2.7.1 68b9930

2.7 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 2.7

Frozen 2.7 7ccfb36

2.6.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 2.6.1

Frozen 2.6.1 bce378e

2.6 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 2.6

Frozen 2.6 75fe254

2.5.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 2.5.2

Frozen 2.5.2 5c30fd8

2.5.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 2.5.1

Frozen 2.5.1 05c6e0b

2.5 (earliest) Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 2.5

Frozen 2.5 c5fc547

Creators and Submitter

Creators

Maxime Garcia
Szilveszter Juhos

Submitter

WorkflowHub Bot

License

MIT License (MIT)

Activity

Views: 30882 Downloads: 14006

Created: 4th Jun 2024 at 11:33

Last updated: 28th Jun 2026 at 03:09

Annotated Properties

Scientific disciplines

Computer Science

nf-core/sarek 2.5.1 3.9.0 (latest) 3.8.1 3.8.0 3.7.1 3.7.0 3.6.1 3.6.0 3.5.1 3.5.0 3.4.4 3.4.3 3.4.2 3.4.1 3.4.0 3.3.2 3.3.1 3.3.0 3.2.3 3.2.2 3.2.1 3.2.0 3.1.2 3.1.1 3.1 3.0.2 3.0.1 3.0 2.7.2 2.7.1 2.7 2.6.1 2.6 2.5.2 2.5.1 2.5 (earliest)