2 items tagged with 'Conversion'.
Work-in-progress
BatchConvert 
A command line tool for converting image data into either of the standard file formats OME-TIFF or OME-Zarr.
The tool wraps the dedicated file converters bfconvert and bioformats2raw to convert into OME-TIFF or OME-Zarr, respectively. The workflow management system NextFlow is used to perform conversion in parallel for batches of images.
The tool also wraps s3 and Aspera clients (go-mc and aspera-cli, respectively). ...
Created: 10th Apr 2023 at 11:40, Last updated: 5th Jul 2023 at 14:47
Views: 1309, Downloads: 81
Stable
BAM-to-FASTQ-QC
General recommendations for using BAM-to-FASTQ-QC
Please see the Genome assembly with hifiasm on Galaxy Australia
guide.
Acknowledgements
The workflow & the doc_guidelines template used are supported by the Australian BioCommons via Bioplatforms Australia funding, the Australian Research Data Commons (https://doi.org/10.47486/PL105) ...
Created: 21st Oct 2021 at 06:52, Last updated: 17th Oct 2022 at 03:51
Views: 2896, Downloads: 68