1 item tagged with 'bowtie2'.
Work-in-progress
Workflow for NonSpliced RNAseq data with multiple aligners.
Steps:
workflow_quality.cwl:
FastQC (control)
fastp (trimming)
bowtie2 (read mapping)
samtosorted-bam
featurecounts (transcript read counts)
kallisto (transcript [pseudo]counts)
Created: 24th Nov 2020 at 11:05, Last updated: 22nd Dec 2020 at 15:55