Workflows
What is a Workflow?Filters
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Created At
Updated At
Workflow type
Galaxy2
Tag
Annotation2
Bioinformatics2
Galaxy2
SNPs2
variant calling2
variant_calling2
Virus2
Alignment1
covid-191
high-throughput_sequencing_analysis1
paired-end1
single-end1
variant1
workflow1
More...
Submitter
Fabrice Touzain2
Team
ANSES-Ploufragan2
Space
Independent Teams2
Topic annotations
Bioinformatics1
Maturity
Stable2
2
Workflows visible to you, out of a total of 2
Stable
PAIRED-END workflow. Align reads on fasta reference/assembly using bwa mem, get a consensus, variants, mutation explanations.
IMPORTANT:
- For "bcftools call" consensus step, the --ploidy file is in "Données partagées" (Shared Data) and must be imported in your history to use the worflow by providing this file (tells bcftools to consider haploid variant calling).
- SELECT THE MOST ADAPTED VADR MODEL for annotation (see vadr parameters).
Stable
SINGLE-END workflow. Align reads on fasta reference/assembly using bwa mem, get a consensus, variants, mutation explanations.
IMPORTANT:
- For "bcftools call" consensus step, the --ploidy file is in "Données partagées" (Shared Data) and must be imported in your history to use the worflow by providing this file (tells bcftools to consider haploid variant calling).
- SELECT the mot ADAPTED VADR MODEL for annotation (see vadr parameters).
