Workflows
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Alternative splicing analysis using RNA-seq.
Analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting)
call and score variants from WGS/WES of rare disease patients
Quantitative Mass Spectrometry nf-core workflow
Proteomics label-free quantification (LFQ) analysis pipeline using OpenMS and MSstats, with feature quantification, feature summarization, quality control and group-based statistical analysis.
Type: Nextflow
Creators: Julianus Pfeuffer, Lukas Heumos, Leon Bichmann, Timo Sachsenberg, Yasset Perez-Riverol
Submitter: WorkflowHub Bot
Protein 3D structure prediction pipeline
Type: Nextflow
Creators: Athanasios Baltzis, Jose Espinosa-Carrasco, Harshil Patel
Submitter: WorkflowHub Bot
Performs phylogenetic placement with EPA-NG
Pipeline for analysis of Molecular Pixelation assays
The pangenome graph construction pipeline renders a collection of sequences into a pangenome graph. Its goal is to build a graph that is locally directed and acyclic while preserving large-scale variation. Maintaining local linearity is important for interpretation, visualization, mapping, comparative genomics, and reuse of pangenome graphs
