Workflows

What is a Workflow?
72 Workflows visible to you, out of a total of 72
nf-core/hlatyping

Precision HLA typing from next-generation sequencing data.

Type: Nextflow

Creators: Christopher Mohr, Alexander Peltzer, Sven Fillinger

Submitter: WorkflowHub Bot

nf-core/crisprseq

Pipeline for the analysis of crispr data

Type: Nextflow

Creators: mirpedrol , mirpedrol , Júlia Mir Pedrol, mirpedrol , mirpedrol , Laurence Kuhlburger

Submitter: WorkflowHub Bot

nf-core/ampliseq

nf-core/ampliseq

16S rRNA amplicon sequencing analysis workflow using QIIME2.

nf-core DOI Cite Preprint

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Type: Nextflow

Creators: Daniel Straub, Alexander Peltzer

Submitter: WorkflowHub Bot

nf-core/viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

Type: Nextflow

Creators: Sarai Varona and Sara Monzon, Patel H, Varona S and Monzon S

Submitter: WorkflowHub Bot

nf-core/viralintegration

Integration of viral sequences in genomic data

Type: Nextflow

Creators: Alyssa Briggs, Edmund Miller

Submitter: WorkflowHub Bot

nf-core/taxprofiler

Taxonomic classification and profiling of shotgun metagenomic data

Type: Nextflow

Creators: James A. Fellows Yates, Sofia Stamouli, Moritz E. Beber, Lauri Mesilaakso, Thomas A. Christensen II, Jianhong Ou, Mahwash Jamy, Maxime Borry, Rafal Stepien, Tanja Normark

Submitter: WorkflowHub Bot

nf-core/smrnaseq

Small RNA-Seq Best Practice Analysis Pipeline.

Type: Nextflow

Creators: Phil Ewels <phil.ewels@scilifelab.se>, P. Ewels <phil.ewels@scilifelab.se>, P. Ewels, Chuan Wang <chuan.wang@scilifelab.se>, C. Wang <chuan.wang@scilifelab.se>, C. Wang, Rickard Hammarén <rickard.hammaren@scilifelab.se>, R. Hammarén <rickard.hammaren@scilifelab.se>, R. Hammarén, Lorena Pantano <lorena.pantano@gmail.com>, L. Pantano <lorena.pantano@gmail.com>, L. Pantano

Submitter: WorkflowHub Bot

nf-core/slamseq

SLAMseq analysis using Slamdunk with various T>C conversion quantifications and QC

Type: Nextflow

Creator: Tobias Neumann

Submitter: WorkflowHub Bot

nf-core/scrnaseq

Pipeline for processing 10x Genomics single cell rnaseq data

Type: Nextflow

Creators: Peter J Bailey, Bailey PJ, Alexander Peltzer, Botvinnik O, Olga Botvinnik, Marques de Almeida F, Peltzer A, Sturm G

Submitter: WorkflowHub Bot

nf-core/sarek

An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing

Type: Nextflow

Creators: Maxime Garcia, Szilveszter Juhos

Submitter: WorkflowHub Bot

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