Teams

EMBL Centre for Bioimage Analysis

The digital platform for the French SARS-CoV-2 genomic surveillance and research program.

The European Marine Omics Biodiversity Observation Network (EMO-BON) is the European Marine Biological Resource Centre’s (EMBRC) response to the need for ecosystem assessment and biological observation of European coastal waters. EMO BON is producing of genomic biodiversity data from 16 coastal stations at frequent time intervals. rich metadata are collected that allow the traceability of the data. Complementary data that included EOVs are collected together with the genomic data. EMO BON genomic ...

Disease Ontology (DO) enrichment analysis is an effective means to discover the associations between genes and diseases. However, most current DO-based enrichment methods were unable to solve the over enriched problem caused by the “true-path” rule. To address this problem, we presents EnrichDO, a double weighted iterative model, which is based on the latest annotations of the human genome with DO terms and integrates the DO graph topology on a global scale. On one hand, to reinforce the saliency ...

Integrating several EU-RI datasets with focus on preclinical and discovery research bioimaging

The main goal of Ewoks is to automate data processing and experiments at large-scale facilities as well as making data processing more scientific (reproducible) and FAIR (traceable). Ewoks is not yet another workflow management system. To ensure the longevity of workflows and their implementation, Ewoks was designed to be a meta workflow system. This allows workflows to be isolated from the underlying software technologies used to execute and manage them.