Workflows

Alignment, assembly and annotation of RNQSEQ reads using TOPHAT (without filtering out host reads).

Alignment, assembly RNASEQ reads and annotation of generated transcripts.

Alignment, assembly and annotation of RNASEQ reads as well as annotation of generated transcripts.

Alignment, assembly and annotation of generated transcripts from RNASEQ reads.

Detects SNPs and INDELs using VARSCAN2.

Detects SNPs and INDELs.