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Independent Teams252 eFlows4HPC47 COVID-19 Biohackathon22 Australian BioCommons20 A Digital Twin for GEOphysical extremes (DT-GEO)16 Galaxy9 Biodiversity Genomics Europe (BGE)8 EOSC-Life7 ERGA7 BioExcel6 HoloFood6 DISSCo - Distributed System of Scientific Collections5 nf-core4 BeYond-COVID (BY-COVID)4 BioDT4 Sanger Tree of Life4 ELIXIR Belgium3 HELIPORT3 AI4Life Space3 ELIXIR2 Molecular Property Diagnostic Suite2 EOSC-Life-WP61 Harvard FASRC1 RECETOX1 JKU 1 NTVy's WorkflowHub1 IRRI-Bioinformatics1 Coupled Catchment Lake Modelling1 AquaINFRA1 More...

COMPSs Tutorials39 IBISBA Workflows22 GalaxyProject SARS-CoV-216 EuroScienceGateway12 MGnify11 EJPRD WP13 case-studies workflows10 Euro-BioImaging10 Galaxy Training Network9 eFlows4HPC general9 Workflows and Distributed Computing8 WP5 - Volcanoes7 WP7 - Earthquakes7 BioBB Building Blocks6 usegalaxy-eu6 UX trial team6 Australian BioCommons6 HoloFood at MGnify6 ERGA Assembly6 Scipion CNB6 CWL workflow SARS-CoV-25 QCIF Bioinformatics5 SeBiMER5 Snakemake-Workflows5 OME5 OpenEBench5 Specimen Data Refinery5 Defragmentation TS5 ELIXIR Proteomics5 NGFF Tools5 Pillar II: Climate5 Pillar III: Urgent computing for natural hazards5 ERGA Annotation5 Biodiversity Genomics Europe (general)5 nf-core viralrecon4 nf-core4 SARS-CoV-2 Data Hubs4 EOSC-Life WP34 Sydney Informatics Hub4 Common Workflow Language (CWL) community4 Galaxy Australia4 CO2MICS Lab4 Vertebrate Genomes Pipelines in Galaxy4 WP6 - Tsunamis4 WP8 - Anthropogenic geophysical extremes4 Tree of Life Genome Assembly4 Tree of Life Genome Analysis4 Integrated and Urban Plant Pathology Laboratory3 EOSC-Life - Demonstrator 7: Rare Diseases3 iPC: individualizedPaediatricCure3 TransBioNet3 Medizinisches Proteom-Center, Medical Bioinformatics3 usegalaxy.be workflows3 Air Quality Prediction3 TRE-FX3 BioDT Use Case 4.1.3.1 Invasive species3 BioDT additional pipelines3 Metabolomics-Reproducibility3 Helmholtz Scientific Project Workflow Platform3 BY-COVID Baseline Use Case: SARS-CoV-2 Vaccine(s) effectiveness in preventing SARS-CoV-2 infection3 Pillar I: Manufacturing3 AI4Life OC3 V-Pipe2 ELIXIR Cloud & AAI2 UNLOCK2 Galaxy Climate2 PNDB2 iwc2 Genomics Coordination Center2 Pawsey Supercomputing Research Centre2 Janis2 MAB - ATGC2 ODA2 Applied Computational Biology at IEG/HMGU2 INFRAFRONTIER workflows2 FAIR Computational Workflows2 CINECA2 Pitagora-Network2 AGRF BIO2 EU-Openscreen2 X-omics2 Cluster Emergent del Cervell Humà2 CAPSID2 NBIS2 GEMS at MLZ2 Computational Science at HZDR2 BioDT Use Case 4.1.1.2 Ecosystem services2 BioDT Use Case 4.1.1.1 Biodiversity dynamics2 BSC-CES2 CSFG2 Polygenic Score Catalog2 EMBL-CBA2 EBP-Nor2 BY-COVID (general)2 MPDS Covid192 Nextflow4Metabolomics2 Ewastools1 Test team1 NMR Workflow1 NanoGalaxy1 IMBforge1 COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource1 LBI-RUD1 Nick-test-team1 Italy-Covid-data-Portal1 lmjxteam21 virAnnot pipeline1 Ay Lab1 EOSC-Life-WP6-Demos1 Harkany Lab1 BioExcel Best Practice Guides1 Testing1 IAA-CSIC1 Melbourne Data Analytics Platform (MDAP)1 Probabilistic graphical models1 GenX1 IPK BIT1 Harvard University FAS Research Computing1 FAME1 CHU Limoges - UF9481 Bioinformatique / CNR Herpesvirus1 Quadram Institute Bioscience - Bioinformatics1 HecatombDevelopment1 Institute of Human Genetics1 Testing RO Crates1 Test Team1 RECETOX1 ELIXIR Training1 Bioinformatics and Biostatistics (BIO2 ) Core1 VIB Bioinformatics Core1 CRC Cohort1 ICAN1 MustafaVoh1 Single Cell Unit1 CO-Graph1 emo-bon1 TestEMBL-EBIOntology1 Toxicology community1 Workflows Australia1 Gyn Department1 ELIXIR Belgium1 URGI1 Size Inc1 GA-VirReport Team1 The Boucher Lab1 pyiron1 Edinburgh Genomics1 Phytoplankton Analysis1 Seq4AMR1 KTest1 Workflow registry test1 Read2Map1 SKM31 ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression1 de.NBI Cloud1 Meta-NanoSim1 ILVO Plant Health1 EMERGEN-BIOINFO1 KircherLab1 Apis-wings1 BCCM_ULC1 Dessimoz Lab1 TRON gGmbH1 Big data in biomedicine1 BioDT Use Case 4.1.2.2 DNA detected biodiversity, poorly known habitats1 BioDT Use Case 4.1.2.1 Crop wild relatives and genetic resources for food security1 BioDT Use Case 4.1.3.2 Endangered species1 BioDT Use Case 4.1.4.1 Disease outbreaks1 BioDT Use Case 4.1.4.2 Pollinators1 MISTIC1 Guigó lab1 Statistical genetics1 Delineating Regions-of-interest for Mass Spectrometry Imaging by Multimodally Corroborated Spatial Segmentation1 WES1 Bioinformatics Unit @ CRG1 Bioinformatics Innovation Lab1 Black Ochre Data Labs1 IRRI Bioinformatics Group1 Zavolan Lab1 Team Cardio1 Bioinformatics workflows for life science1 Workflows for geographic science1 Pacific-deep-sea-sponges-microbiome1 SNAKE1 Katdetectr1 INFRAFRONTIER GmbH1 PerMedCoE1 Lake Erken modelling setup1 EOSC-Life WP3 OC Team, cross RI project1 ANSES-Ploufragan1 SANBI Pathogen Bioinformatics1 Biodata Analysis Group1 DeSci Labs1 Erasmus MC - Viroscience Bioinformatics1 ARA-dev1 Mendel Centre for Plant Genomics and Proteomics1 Metagenomic tools1 WorkflowEng1 bpm1 scNTImpute1 Systems Biotechnology laboratory1 Cimorgh IT solutions1 MLme: Machine Learning Made Easy1 Hurwitz Lab1 Dioscuri TDA1 System Biotechnology laboratory1 yPublish - Bioinfo tools1 NIH CFDE Playbook Workflow Partnership1 MMV-Lab1 Evaluation of Swin Transformer and knowledge transfer for denoising of super-resolution structured illumination microscopy data1 Bioinformatics Laboratory for Genomics and Biodiversity (LBGB)1 multi-analysis dFC1 CholGen1 RNA group1 Plant Genomes Pipelines in Galaxy1 Pathogen Genomic Laboratory1 Chemical Data Lab1 JiangLab1 Pangenome database project1 HP2NET - Framework for construction of phylogenetic networks on High Performance Computing (HPC) environment1 Center for Open Bioimage Analysis1 Building spatio-temporal workflows in Galaxy1 Generalized Open-Source Workflows for Atomistic Molecular Dynamics Simulations of Viral Helicases1 Historical DNA genome skimming1 MPDS1 QCDIS1 Peter Menzel's Team1 NHM Clark group1 ESRF Workflow System (Ewoks)1 Kalbe Bioinformatics1 GBCS1 CEMCOF1 More...

Barcelona Supercomputing Center (BSC-CNS)25 EMBL-EBI17 Unspecified15 The University of Manchester13 Universitat Politècnica de Catalunya - BarcelonaTech (UPC)12 Istituto Nazionale di Geofisica e Vulcanologia (INGV)11 Euro-BioImaging10 Australian BioCommons9 Spanish National Research Council (CSIC)9 EJP-RD8 ELIXIR Belgium7 INRAe6 Erasmus University Medical Centre6 European Galaxy Team6 QCIF5 IFREMER5 IRISA4 University of Melbourne4 Centre National de la Recherche Scientifique (CNRS)4 The University of Sydney4 Galaxy4 Wellcome Sanger Institute4 Albert-Ludwigs-Universität Freiburg3 SIB - Swiss Institute of Bioinformatics3 University of Bradford3 French Museum of Natural History3 Liege university3 Harvard University3 The Natural History Museum London3 Helmholtz-Zentrum Dresden - Rossendorf3 Geosciences Barcelona (GEO3BCN-CSIC)3 European Molecular Biology Laboratory3 JNU - School of Computational and Integrative Sciences (SC&IS)2 UNLOCK2 IISER, Mohali2 Institute for Research in Biomedicine (IRB)2 Pawsey Supercomputing Centre2 University Medical Center Groningen2 Maastricht University2 University of Basel2 University of Duisburg-Essen2 MMODA2 Biomedical Research Foundation (BRFAA) of the Academy of Athens2 Helmholtz Zentrum München2 INFRAFRONTIER GmbH2 University of Dundee2 VIB2 The University of Melbourne2 Medical Proteome Center2 Fraunhofer Institute for Translational Medicine and Pharmacology ITMP2 X-omics2 EMBL2 CNRS - Centre Est2 NBIS – National Bioinformatics Infrastructure Sweden2 ELIXIR2 National Laboratory of Scientific Computing2 University of Lausanne2 Helmholtz Zentrum Hereon2 Sciensano2 IZW2 Open Microscopy Enronment (OME)2 Masaryk University2 ETH Zürich2 Mondaic AG2 University of Nottingham2 Fondazione Centro Euro-Mediterraneo sui Cambiamenti Climatici (CMCC)2 Naturalis2 Norwegian Geotechnical Institute2 CSIR-North East Institute of Science and Technology2 ai4life2 BC Centre for Disease Control1 Institut Pasteur1 Earlham Institute1 CRS41 CIRMMP1 SciLifeLab1 gx-climate1 Institute of Molecular Biology1 VU Amsterdam1 LBI-RUD1 ELIXIR-IT1 lmjxteam21 Bots1 La Jolla Institute of Immunology1 ff1 Medical University of Vienna1 Peter MacCallum Cancer Centre1 Leiden University Medical Center1 GenX1 IPK Gatersleben1 e-NIOS1 FAME1 CHU Limoges1 Quadram Institute Bioscience1 Washington University in St. Louis1 University of Queensland1 FCBG1 RECETOX1 ELIXIR-UK1 Wellcome-MRC Institute of Metabolic Science1 Institut du thorax1 Shri Vinoba Bhave Civil Hospital1 National University of Ireland, Galway1 BSRC Alexander Fleming1 CO-Graph1 IMBBC-HCMR1 University of Tartu1 Database Center for Life Science1 Johannes Kepler University1 AGRF1 university of manchester1 Size1 Queensland university of Technology1 University of Florida1 Max-Planck-Institut für Eisenforschung1 University of Edinburgh1 Penn State University1 Medical Research Council Brain Network Dynamics Unit at the University of Oxford Nuffield Department of Clinical Neurosciences1 Defragmentation TS1 Hubrecht Institute1 Italian National Research Council1 University of Science, HCMVNU1 University of Illinois at Urbana-Champaign1 Texas A&M University1 The Open University1 de.NBI Cloud1 BC Cancer Genome Sciences Centre1 Institute for Agricultural, Fisheries and Food Research (ILVO)1 CNRS1 Berlin Institute of Health at Charité - Universitätsmedizin Berlin1 University of Agriculture in Krakow1 BCCMULC1 TRON1 Helmholtz-Zentrum Dresden-Rossendorf1 TUM - Technical University of Munich1 UK Centre for Ecology & Hydrology1 metagenome-workflows1 Inria1 Centre for Genomic Regulation (CRG)1 Universitat de Barcelona (UB)1 Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences1 Oak Ridge National Laboratory1 Centre for Genomic Regulation1 Pondicherry University1 Telethon Kids Institute1 International Rice Research Institute1 University of Southern Denmark1 Friedrich Schiller University1 Centenary Institute1 Merck KGaA1 CNIC1 Concordia University CSFG1 Leibniz Institute for Zoo and Wildlife Research1 German Cancer Research Center (DKFZ)1 University of Córdoba1 Biocampus1 German BioImaging1 Leibniz Institute of Plant Biochemistry1 CCMAR1 Uppsala University1 EOSC-Life1 French Agency for Food, Environmental and Occupational Health & Safety (Ploufragan-Plouzané-Niort Laboratory)1 SANBI, University of the Western Cape1 Institute of Applied Biosciences, Centre of Research and Technology, Hellas (INAB|CERTH)1 Mount Sinai1 Kyoto University1 DeSci Labs1 Adam Mickiewicz University1 ACC Cyfronet AGH1 University of Cambridge1 The North China University of Technology1 Yunnan Normal University1 cimorgh IT1 CNAG1 University of Bern1 The University of Arizona1 Genoscope1 Mathematical Institute Polish Academy of Sciences1 yPublish1 Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V.1 University of Bergen1 Bielefeld university of applied sciences and arts1 University of Oslo1 McGill University1 EPFL1 nf-core1 CholGen1 IBP1 CMB genomics1 Shandong Academy of Agricultural Sciences1 Institut National de Recherche Biomédicale1 Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc1 National Libarary of Medicine1 Center for Open Bioimage Analysis1 Applied Omics Wóycicki1 Universitat Rovira i Virgili1 ESI group1 University of Amsterdam1 Labor Berlin1 European Synchrotron Radiation Facility (ESRF)1 BIOPOLIS Association (BIOPOLIS-CIBIO)1 Helmholtz-Centre for Environmental Research (UFZ)1 More...

Spain57 United Kingdom53 Germany46 France32 Australia29 Italy22 Netherlands20 Belgium15 Switzerland13 United States13 India8 China7 Norway5 Canada4 Czechia4 Poland4 Sweden4 Afghanistan3 Austria3 Brazil3 Greece3 Denmark2 Japan2 Congo, The Democratic Republic of the1 Estonia1 Ireland1 Iran1 Kenya1 Philippines1 Portugal1 Vietnam1 South Africa1 More...

Bioinformatics32 Scientific workflow developement13 Software Engineering12 Metagenomics10 Data Management9 Computer Science9 Genomics8 Machine Learning8 Systems Biology6 NGS6 Microbiology5 Cheminformatics5 Bioengineering4 AI4 High Performance Computing4 Molecular Biology3 Metabarcoding3 image analysis3 high-performance computing3 Biochemistry2 Mathematical Modelling2 Python2 Workflows2 Computer Aided Design2 Biostatistics2 amplicon analysis2 Database Development2 phylogenomics2 astronomy2 evolution2 Genetics1 Proteomics1 Metabolomics1 R1 Synthetic Biology1 Retrosynthesis1 Neuroscience1 algorithm1 Mass Spectrometry Imaging1 bash1 Ecophysiology1 Molecular Modelling1 Biomolecular Dynamics Simulations1 Protein Structural Alignment1 phylogenetics1 Plant Sciences1 WDL1 Lipidomics1 workflow managers1 open source1 fuzzy logic1 graphs1 Limnology1 numerical methods1 Geophysics1 Probabilistic Inversion1 Theoretical Seismology1 Programming Models1 Distributed Computing1 Provenance1 Semantic Web1 Ontology1 Knowledge Graph1 Grid Computing1 Bioimage1 More...

Python26 Workflows17 R15 Nextflow9 Jupyter notebook9 Transcriptomics8 Databases7 Galaxy7 Machine Learning6 Web services5 CWL5 Snakemake5 nf-core4 Molecular Biology3 Mathematical Modelling3 Genomics3 Java3 Perl3 PCR3 C/C++3 Web2 Git2 Microbiology1 Computational and theoretical biology1 Genetic analysis1 Proteomics1 Virology1 Single Cell analysis1 SBML1 Matlab1 rtPCR1 Mass spectrometry1 Cytoscape1 Conda1 Roddy1 COMPSs1 Napari1 MIAPPE1 WDL1 Autosubmit1 Cylc1 ecFlow1 C1 C++1 SPARQL1 RDF1 OWL1 RML1 ShEx1 Parsl1 OmpSs1 OpenCL1 More...