Workflows
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Workflow type
Nextflow1
Tag
Bioinformatics1
cancer1
FAIR workflows1
GATK41
Genomics1
HPC1
human1
INDELs1
Nextflow1
snv1
Somatic1
variant calling1
WGS1
workflow1
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Submitter
Georgina Samaha1
Space
Australian BioCommons1
Maturity
Work-in-progress1
1
Workflow visible to you, out of a total of 1
Work-in-progress
This is a Nextflow implementaion of the GATK Somatic Short Variant Calling workflow. This workflow can be used to discover somatic short variants (SNVs and indels) from tumour and matched normal BAM files following GATK's Best Practices Workflow. The workflowis currently optimised to run efficiently and at scale on the National Compute Infrastructure, Gadi.
Type: Nextflow
Creators: Nandan Deshpande, Tracy Chew, Cali Willet, Georgina Samaha
Submitter: Georgina Samaha
