Workflows
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Created At
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Workflow type
Common Workflow Language1
Submitter
Changlin Ke1
Team
UNLOCK1
Space
Independent Teams1
Topic annotations
Data quality management1
Bioinformatics1
Metagenomic sequencing1
Metagenomics1
Sequence assembly1
Operation annotations
Data quality management1
Maturity
Stable1
1
Workflow matching the given criteria:
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Creator:
Changlin Ke1
Topic annotations:
Data quality management1
Stable
Workflow for Illumina Quality Control and Filtering
Multiple paired datasets will be merged into single paired dataset.
Summary:
- FastQC on raw data files
- fastp for read quality trimming
- BBduk for phiX and (optional) rRNA filtering
- Kraken2 for taxonomic classification of reads (optional)
- BBmap for (contamination) filtering using given references (optional)
- FastQC on filtered (merged) data
Other UNLOCK workflows on WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default ...
Type: Common Workflow Language
Creators: Bart Nijsse, Jasper Koehorst, Changlin Ke
Submitter: Bart Nijsse
