Performs Long Read assembly using PacBio data and Hifiasm. Part of VGP assembly pipeline. This workflow generate a phased assembly.
Creator: Delphine Lariviere
Submitter: Cristóbal Gallardo
Performs scaffolding using HiC Data. Part of VGP assembly pipeline. The scaffolding can be performed on long read assembly contigs or on scaffolds (e.g.: Bionano scaffolds).
Performs scaffolding using Bionano Data. Part of VGP assembly pipeline.
Purge Phased assembly of duplications and overlaps. Include purge steps for Primary and Alternate assemblies.
Create Meryl Database used for the estimation of assembly parameters and quality control with Merqury. Part of the VGP pipeline.
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