Workflows

Name: Workflows
License: https://spdx.org/licenses/CC-BY-4.0

What is a Workflow?

1 Workflow matching the given criteria: (Clear all filters)

Tool:

Topic annotations:

VVV2_align_PE

ANSES-Ploufragan

Stable

PAIRED-END workflow. Align reads on fasta reference/assembly using bwa mem, get a consensus, variants, mutation explanations.

IMPORTANT:

For "bcftools call" consensus step, the --ploidy file is in "Données partagées" (Shared Data) and must be imported in your history to use the worflow by providing this file (tells bcftools to consider haploid variant calling).
SELECT THE MOST ADAPTED VADR MODEL for annotation (see vadr parameters).

Type: Galaxy

Creator: Fabrice Touzain

Submitter: Fabrice Touzain

Created: 28th Jun 2023 at 10:52, Last updated: 2nd Oct 2023 at 14:45