Workflow Type: Galaxy

Run velocyto to get loom with counts of spliced and unspliced. It will extract the 'barcodes' from the bundled outputs.

Inputs

ID Name Description Type
BAM files with CB and UB #main/BAM files with CB and UB This can be output of CellRanger or STARsolo
  • array containing
    • File
filtered matrices in bundle #main/filtered matrices in bundle This can be output of STARsolo or DropletUtils
  • array containing
    • File
gtf file #main/gtf file gtf file
  • File

Steps

ID Name Description
3 extract barcodes from bundle __APPLY_RULES__
4 Velocyto_on10X_filtered_barcodes n/a

Outputs

ID Name Description Type
velocyto loom #main/velocyto loom n/a
  • File

Version History

v0.2 (latest) Created 14th Mar 2024 at 03:01 by WorkflowHub Bot

Updated to v0.2


Frozen v0.2 58600da

v0.1 (earliest) Created 27th Jan 2024 at 03:01 by WorkflowHub Bot

Updated to v0.1


Frozen v0.1 2264428
help Creators and Submitter
Creator
  • Lucille Delisle
Submitter
License
Activity

Views: 2157   Downloads: 337   Runs: 0

Created: 27th Jan 2024 at 03:01

help Attributions

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Total size: 33.4 KB
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