Version 1

Workflow Type: Galaxy

An example workflow for the Specimen Data Refinery tool, allowing an individual tool to be used


ID Name Description Type
singles_or_list singles_or_list runtime parameter for tool Bundle Collection n/a


ID Name Description
0 Input dataset
1 Remove header Remove beginning1
2 Split file toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.0
3 Create specimen data object from csv sdr_create_sdo_from_csv
4 Filter failed datasets __FILTER_FAILED_DATASETS__
5 JQ toolshed.g2.bx.psu.edu/repos/iuc/jq/jq/1.0
6 DLA - detect regions sdr_teklia_worker_dla
7 Bundle Collection toolshed.g2.bx.psu.edu/repos/nml/bundle_collections/bundle_collection/1.3.0


ID Name Description Type
out_file1 out_file1 n/a
list_output_txt list_output_txt n/a
output output n/a
output output n/a
output output n/a
output output n/a
html_file html_file n/a

Version History

Version 1 (earliest) Created 8th Jul 2022 at 14:04 by Oliver Woolland

Initial commit

Frozen Version-1 f7cd2a2
help Creators and Submitter
Livermore, L., & Woolland, O. (2022). DLA-Collections-test. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.374.1

Views: 111

Created: 8th Jul 2022 at 14:04

Last used: 12th Aug 2022 at 03:05

help Attributions


Total size: 13.5 KB
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