Workflow Type: Galaxy
Frozen
Work-in-progress
An example workflow for the Specimen Data Refinery tool, allowing an individual tool to be used
Inputs
ID | Name | Description | Type |
---|---|---|---|
singles_or_list | singles_or_list | runtime parameter for tool Bundle Collection | n/a |
Steps
ID | Name | Description |
---|---|---|
0 | Input dataset | |
1 | Remove header | Remove beginning1 |
2 | Split file | toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.0 |
3 | Create specimen data object from csv | sdr_create_sdo_from_csv |
4 | Filter failed datasets | __FILTER_FAILED_DATASETS__ |
5 | JQ | toolshed.g2.bx.psu.edu/repos/iuc/jq/jq/1.0 |
6 | DLA - detect regions | sdr_teklia_worker_dla |
7 | Bundle Collection | toolshed.g2.bx.psu.edu/repos/nml/bundle_collections/bundle_collection/1.3.0 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
out_file1 | out_file1 | n/a | |
list_output_txt | list_output_txt | n/a | |
output | output | n/a | |
output | output | n/a | |
output | output | n/a | |
output | output | n/a | |
html_file | html_file | n/a |
Version History
Version 1 (earliest) Created 8th Jul 2022 at 14:04 by Oliver Woolland
Initial commit
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Version-1
f7cd2a2

Creators
Submitter
Citation
Livermore, L., & Woolland, O. (2022). DLA-Collections-test. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.374.1
License
Activity
Views: 110
Created: 8th Jul 2022 at 14:04
Last used: 11th Aug 2022 at 00:55

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