Workflow Type: Galaxy

An example workflow to allow users to run the Specimen Data Refinery tools on data provided in an input CSV file.


ID Name Description Type
DLA Region - Training Model DLA Region - Training Model n/a n/a
DLA Text - Training Model DLA Text - Training Model n/a n/a


ID Name Description
0 DLA Region - Training Model
1 DLA Text - Training Model
2 Input dataset
3 Remove header Remove beginning1
4 Split file
5 Create specimen data object from csv sdr_create_sdo_from_csv
6 Filter failed datasets __FILTER_FAILED_DATASETS__
7 Extract file name
8 DLA - detect regions sdr_teklia_worker_dla
9 DLA - detect text lines sdr_teklia_worker_dla
10 SDR Teklia worker-htr sdr_teklia_worker_htr
11 SDR Teklia worker-ner sdr_teklia_worker_ner
12 Bundle Collection


ID Name Description Type
out_file1 out_file1 n/a
list_output_txt list_output_txt n/a
output output n/a
output output n/a
output output n/a
output output n/a
output output n/a
output output n/a
output output n/a
html_file html_file n/a

Version History

Version 2 (latest) Created 14th Dec 2022 at 16:05 by Oliver Woolland

No revision comments

Open master 916e4cb

Version 1 (earliest) Created 8th Jul 2022 at 14:00 by Oliver Woolland

Initial commit

Frozen Version-1 758314e
help Creators and Submitter

Views: 2053

Created: 8th Jul 2022 at 14:00

help Attributions


Total size: 15.8 KB
Powered by
Copyright © 2008 - 2023 The University of Manchester and HITS gGmbH