Python Structural DNA helical parameters tutorial
Structural DNA helical parameters from MD trajectory tutorial using BioExcel Building Blocks (biobb)
Based on the NAFlex server and in particular in its Nucleic Acids Analysis section.
This tutorial aims to illustrate the process of extracting structural and dynamical properties from a DNA MD trajectory helical parameters, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Drew Dickerson Dodecamer sequence -CGCGAATTCGCG- (PDB code 1BNA). The trajectory used is a 500ns-long MD simulation taken from the BigNASim database (NAFlex_DDD_II entry).
Copyright & Licensing
This software has been developed in the MMB group at the BSC & IRB for the European BioExcel, funded by the European Commission (EU H2020 823830, EU H2020 675728).
- (c) 2015-2022 Barcelona Supercomputing Center
- (c) 2015-2022 Institute for Research in Biomedicine
Licensed under the Apache License 2.0, see the file LICENSE for details.
Version 3 (latest) Created 14th Apr 2023 at 09:48 by Genís Bayarri
Update to BioBB 4.0.*
Version 2 Created 22nd Nov 2022 at 10:14 by Genís Bayarri
Version 1 (earliest) Created 17th Mar 2022 at 11:10 by Genís Bayarri
Created: 17th Mar 2022 at 11:10
Last updated: 14th Apr 2023 at 09:48