Workflow Type: Jupyter
Stable

AMBER Protein MD Setup tutorials using BioExcel Building Blocks (biobb)

Based on the official GROMACS tutorial.


This tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb) wrapping the Ambertools MD package.


Copyright & Licensing

This software has been developed in the MMB group at the BSC & IRB for the European BioExcel, funded by the European Commission (EU H2020 823830, EU H2020 675728).

Licensed under the Apache License 2.0, see the file LICENSE for details.

Version History

Version 5 (latest) Created 4th Mar 2024 at 15:33 by Genís Bayarri

Update to 4.1.*


Frozen Version-5 d89761c

Version 4 Created 26th Jul 2023 at 10:38 by Genís Bayarri

Fixed importlib_metadata bug


Frozen Version-4 6e57380

Version 3 Created 14th Apr 2023 at 09:40 by Genís Bayarri

Update to BioBB 4.0.*


Frozen Version-3 a85a571

Version 2 Created 15th Sep 2022 at 13:33 by Genís Bayarri

Update to BioBB 3.8.*. taken from Git commit faad0ab


Frozen Version-2 feca1da

Version 1 (earliest) Created 30th Jun 2021 at 13:23 by Genís Bayarri

Initial commit. Taken from Git commit 5ae6892


Frozen Version-1 0c034db
help Creators and Submitter
Citation
Hospital, A., & Bayarri, G. (2024). Jupyter Notebook Amber Constant pH MD Setup tutorial. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.132.5
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Views: 3147   Downloads: 579

Created: 30th Jun 2021 at 13:23

Last updated: 14th Apr 2023 at 09:40

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