snakemake_ATACseq_spikein: a spike-in–normalized ATAC-seq Snakemake workflow

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Citation

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Type: Snakemake

Creator: Ji Wang

Submitter: Ji Wang

nf-core/hicar

This pipeline analyses data for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.

Type: Nextflow

Creators: Jianhong Ou, Yu Xiang, Yarui Diao

Submitter: WorkflowHub Bot

nf-core/differentialabundance

Open in GitHub Codespaces GitHub Actions CI Status [![GitHub Actions Linting ...

Type: Nextflow

Creators: Oskar Wacker, Jonathan Manning

Submitter: WorkflowHub Bot

nf-core/atacseq

ATACSeq peak-calling and differential analysis pipeline.

Type: Nextflow

Creators: Harshil Patel, Patel H, Langer B, Espinosa-Carrasco J, Syme R

Submitter: WorkflowHub Bot

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