4 items tagged with 'AMR'.
Work-in-progress
This is an aggregation of the work done in Seq4AMR consisting of the following workflows:
- WF1: AbritAMR / AMRFinderPlus
- WF2: Sciensano (not currently included)
- WF3: SRST2
- WF4: StarAMR
Installation
- You will need to:
- run the [RGI Database ...
Tests Antimicrobial resistance gene detection from assembled bacterial genomes
Type: Galaxy
Creators: ABRomics , Pierre Marin, Clea Siguret, abromics-consortium
Submitter: WorkflowHub Bot
Pipeline for screening for functional components of assembled contigs
Type: Nextflow
Creators: Jasmin Frangenberg, Anan Ibrahim, James A. Fellows Yates
Submitter: WorkflowHub Bot
Work-in-progress
Correlation between Phenotypic and In Silico Detection of Antimicrobial Resistance in Salmonella enterica in Canada Using Staramr.
Doi: 10.3390/microorganisms10020292
| tool | version | license |
|---|---|---|
| staramr | 0.8.0 | Apache-2.0 license |
