Workflows
What is a Workflow?Filters
Using:
- vadr annotation (model to select)
- vardict variant caller
- coverage depth
Provides summarizing files:
- png image of variant calling with annotations and coverage depths
- tsv file with all information of significant variants only
- vcf file with all information of significant variants only (to allow downstream NextStrain analyses)
Type: Galaxy
Creators: Fabrice Touzain, This study was founded by the French National Research Agency and by Santé publique France as part of the project "EMERGEN". Anses Ploufragan research was also supported by Agglomération de Saint-Brieuc, Département des Côtes d'Armor and Région Bretagne
Submitter: Fabrice Touzain
Using:
- vadr annotation (model to select)
- vardict variant caller
- coverage depth
Provides summarizing files:
- png image of variant calling with annotations and coverage depths
- tsv file with all information of significant variants only
- vcf file with all information of significant variants only (to allow downstream NextStrain analyses)
Type: Galaxy
Creators: Fabrice Touzain, This study was founded by the French National Research Agency and by Santé publique France as part of the project "EMERGEN". Anses Ploufragan research was also supported by Agglomération de Saint-Brieuc, Département des Côtes d'Armor and Région Bretagne
Submitter: Fabrice Touzain
Using:
- vadr annotation (model to select)
- vardict variant caller
- coverage depth
Provides summarizing files:
- png image of variant calling with annotations and coverage depths
- tsv file with all information of significant variants only
- vcf file with all information of significant variants only (to allow downstream NextStrain analyses)
Type: Galaxy
Creators: Fabrice Touzain, This study was founded by the French National Research Agency and by Santé publique France as part of the project "EMERGEN". Anses Ploufragan research was also supported by Agglomération de Saint-Brieuc, Département des Côtes d'Armor and Région Bretagne
Submitter: Fabrice Touzain
Using:
- vadr annotation (model to select)
- vardict variant caller
- coverage depth
Provides summarizing files:
- png image of variant calling with annotations and coverage depths
- tsv file with all information of significant variants only
- vcf file with all information of significant variants only (to allow downstream NextStrain analyses)
Type: Galaxy
Creators: Fabrice Touzain, This study was founded by the French National Research Agency and by Santé publique France as part of the project "EMERGEN". Anses Ploufragan research was also supported by Agglomération de Saint-Brieuc, Département des Côtes d'Armor and Région Bretagne
Submitter: Fabrice Touzain
