Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Tool
HISAT21
BUSCO5
FastQC5
MultiQC5
Stacks5
Bandage3
Bwa-mem23
Minimap23
QUAST3
SAMtools3
BEDTools2
fastp2
Flye2
Racon2
StringTie2
Biopython1
compute_sequence_length1
Cutadapt1
FASTX-Toolkit1
FGENESH1
GenomeScope 2.01
gfastats1
ggplot21
HiFiAdapterFilt1
Medaka1
Merqury1
NanoPlot1
picard_samtofastq1
purge_dups1
RepeatMasker1
RepeatModeler1
seqtk1
TransDecoder1
Trimmomatic1
YaHS1
More...
Workflow type
Galaxy1
Tag
TSI-annotation1
Submitter
Anna Syme1
Space
Australian BioCommons1
Creator
Anna Syme1
Collection
TSI annotation workflows1
This is part of a series of workflows to annotate a genome, tagged with TSI-annotation.
These workflows are based on command-line code by Luke Silver, converted into Galaxy Australia workflows.
The workflows can be run in this order:
- Repeat masking
- RNAseq QC and read trimming
- Find transcripts
- Combine transcripts
- Extract transcripts
- Convert formats
- Fgenesh annotation
About this workflow:
- Run this workflow per tissue.
- Inputs: masked_genome.fasta and the trimmed RNAseq reads ...
