Workflows
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Shell Script1
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cancer1
Gadi1
GATK41
INDELs1
Mutect21
NCI1
NCI Gadi1
NCI-Gadi1
scalable1
SNPs1
Somatic1
tumour1
variant_calling1
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Tracy Chew1
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Australian BioCommons1
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Genome analysis1
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Genome analysis1
De-novo assembly3
Variant calling3
Indel detection2
Sequence assembly2
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Differential gene expression profiling1
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Gene expression profiling1
Genetic mapping1
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Sequence alignment1
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Work-in-progress1
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Workflow matching the given criteria:
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Sydney Informatics Hub1
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Genome analysis1
Work-in-progress
Somatic-ShortV @ NCI-Gadi is a variant calling pipeline that calls somatic short variants (SNPs and indels) from tumour and matched normal BAM files following GATK's Best Practice Workflow. This workflow is designed for the National Computational Infrastructure's (NCI) Gadi supercompter, leveraging multiple nodes on NCI Gadi to run all stages of the workflow in parallel. ...
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