Workflows
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Created At
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Workflow type
Common Workflow Language2
Tag
Bioinformatics2
Alignment1
cage1
cage-seq1
CWL1
Databases1
Docker1
genome-annotation1
GTF1
human1
Plant1
protein-structure1
Python1
Transcription Start Sites1
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Submitter
Sora Yonezawa2
Team
bonohulab2
Topic annotations
Function analysis1
Functional genomics1
Genetics1
Protein structure analysis1
Proteins1
Transcriptomics1
Operation annotations
Genome annotation1
Global alignment1
Local alignment1
Pairwise sequence alignment1
Structure-based sequence alignment1
Maturity
Work-in-progress1
2
Workflows visible to you, out of a total of 2
CWL4IncorporateTSSintoGXF
This workflow determines TSS based on the analysis of CAGE-seq data and incorporates TSS information and 5'UTR information calculated based on TSS information into the gene annotation file (gff/gtf). The R package, TSSr, is used to determine TSS.
Requirements
Install using pip
pip install cwltool
Install using conda
conda create -n cwltool
conda activate
...
Work-in-progress
plant2human workflow
